PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011097893.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bZIP

Protein Properties

Length: 380aa MW: 43045.7 Da PI: 5.532

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011097893.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.2	4.7e-10	86	116	5	35
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekv 35 k +rr+++NReAAr+sR+RKka++++Le+ XP_011097893.1 86 KIQRRLAQNREAARKSRLRKKAYVQQLETSR 116 779************************9854 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.1E-7	79	131	No hit	No description
SMART	SM00338	2.0E-5	82	146	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.059	84	128	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.29E-6	86	131	No hit	No description
Pfam	PF00170	3.4E-7	86	119	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	89	104	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.2E-27	172	246	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MYSDFQVPDM TSPTTQFAPP SRIGIYEPLR QIGMWEDTFD DNISAGTGVC IIMETEAKLD 60 DKTEYASDKS LEHAEDSQAS KSISEKIQRR LAQNREAARK SRLRKKAYVQ QLETSRMKLA 120 QLELELERAR QQQGLLIASA TANVGICGTI NPGIAAFEME YRHWIDEQER KISELRNLLQ 180 SPIGDAELRM VVENVLNHYC NLFRMKRDAA RADAFYLESG MWRTSVERFF LWIGGFRPSE 240 LINVVMPQLE PLTEEQIASV NNLRHSCVQA EDALSQGMEK LQQTLAQSLT FLAAGAGNYS 300 SQTAAALEKL ESLESFINQA DHLREQTLHQ MSRILTTRQA AKGLLAFGEY FQRLRALSSL 360 WSARSIENLA NLQNDANSIR

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MYSDFQVPDM TSPTTQFAPP SRIGIYEPLR QIGMWEDTFD DNISAGTGVC IIMETEAKLD  60
DKTEYASDKS LEHAEDSQAS KSISEKIQRR LAQNREAARK SRLRKKAYVQ QLETSRMKLA  120
QLELELERAR QQQGLLIASA TANVGICGTI NPGIAAFEME YRHWIDEQER KISELRNLLQ  180
SPIGDAELRM VVENVLNHYC NLFRMKRDAA RADAFYLESG MWRTSVERFF LWIGGFRPSE  240
LINVVMPQLE PLTEEQIASV NNLRHSCVQA EDALSQGMEK LQQTLAQSLT FLAAGAGNYS  300
SQTAAALEKL ESLESFINQA DHLREQTLHQ MSRILTTRQA AKGLLAFGEY FQRLRALSSL  360
WSARSIENLA NLQNDANSIR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011097893.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097893.1	0.0	transcription factor TGA4 isoform X1
Swissprot	Q39237	1e-148	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A2G9GQM5	0.0	A0A2G9GQM5_9LAMI; Uncharacterized protein
STRING	Migut.C00214.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-131	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]