PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011097672.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family WRKY
Protein Properties Length: 728aa    MW: 78031.7 Da    PI: 6.3769
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011097672.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.3e-31305362260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK+vkgse+prsYY+Ct+++C vkkkvers+ +++++ei+ +g Hnh+k
  XP_011097672.1 305 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCAVKKKVERSH-EGHITEIIHKGAHNHPK 362
                     8****************************************.***************85 PP
2WRKY104.27.3e-33517575159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  XP_011097672.1 517 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERASHDLKSVITTYEGKHNHD 575
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-26303363IPR003657WRKY domain
SMARTSM007741.2E-33304362IPR003657WRKY domain
SuperFamilySSF1182903.66E-24304363IPR003657WRKY domain
PfamPF031065.0E-23305361IPR003657WRKY domain
PROSITE profilePS5081122.481305363IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.4E-37502577IPR003657WRKY domain
SuperFamilySSF1182901.44E-28509577IPR003657WRKY domain
PROSITE profilePS5081138.733512577IPR003657WRKY domain
SMARTSM007746.6E-38517576IPR003657WRKY domain
PfamPF031065.0E-25518575IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MGGFDDHVAI MGDWMPPSPS PRAFFTSMIA DDVVARAIAD SSVENEGRPP FLGPEGHSAS  60
GSADRNDLRQ ASTVGDEASN SNSLNGPKLS SRGGLMERIA ARAGFNAPRL NTESIKPADL  120
SKNQEVRSPY LTIPPGLSPA TLLESPVFLS NSLVLPSPTT GKFSFAPSGN NQNSMLMSDD  180
PDKGKENTSG DTSSFAFKPI PESGTIPYFS AANKAYDSGF APQSFPGVGV SARSDTSFLH  240
RSAEPPEIQT FSKPHAEKKA GSNLSSEQTY HSVGFAENSP PLDEPHGDDG DQRSSGDNIG  300
GSQAEDGYNW RKYGQKQVKG SEYPRSYYKC THPNCAVKKK VERSHEGHIT EIIHKGAHNH  360
PKPPPNRRSA FGSSSALSDI QLESEQPGTD ANGDLVWSTV QNGNAPGAPD WRQDNLEATS  420
SAELVQEYSN GATFQAQNGA QYESGDAVDG SSPFSNDEED DDQATHASVS LGYDVEGDES  480
ESKRRRIETY ASEMSGATRA IREPRVVVQT TSEVDILDDG YRWRKYGQKV VKGNPNPRSY  540
YKCTSAGCNV RKHVERASHD LKSVITTYEG KHNHDVPAAR NSSHVNSGGS NTLPAQQAHG  600
AAVSSQVHRP EPSQIHGSAA QFERPGLGSF SLPGRPQLGL GPGFGFGMNQ AGLASLGLAR  660
LGCNQSKLPV LPVHPYLGHQ PRPMSGMGLM QPKAEPKLEP LTDSVLNSSH RSSVYQQLIS  720
RLPLGPQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-37305578878Probable WRKY transcription factor 4
2lex_A9e-37305578878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1482486KRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011097672.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097672.10.0probable WRKY transcription factor 2 isoform X1
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A2G9HU640.0A0A2G9HU64_9LAMI; Uncharacterized protein
STRINGVIT_19s0015g01870.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37112341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-172WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]