PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011097656.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NAC

Protein Properties

Length: 294aa MW: 32369.9 Da PI: 9.8629

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011097656.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.5	3.2e-33	93	169	53	129
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + kewyf+s+rd+kyatg r+nrat sgyWkatgkd++v++ +++lvg++ktLvfykgrapkg+kt+Wvmhe+rle XP_011097656.1 93 VGGKEWYFYSQRDRKYATGIRTNRATISGYWKATGKDRPVCVDGTTLVGMRKTLVFYKGRAPKGRKTEWVMHEFRLE 169 3779************************************999***************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	35.026	50	195	IPR003441	NAC domain
Pfam	PF02365	9.2E-16	64	168	IPR003441	NAC domain
SuperFamily	SSF101941	3.14E-37	91	196	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MGIQLSLSVF MSLFSLSLST LTGHEILLSS IFKKNSSGAN KYKIMGWGAG IEEAKGAPTP 60 APCLDRQLTC KKRQRPDSFF PRNSPTATES ACVGGKEWYF YSQRDRKYAT GIRTNRATIS 120 GYWKATGKDR PVCVDGTTLV GMRKTLVFYK GRAPKGRKTE WVMHEFRLEG TLGPGPNTPS 180 LPTKEDWVLC RVFHKNRTEV ASKQEITGIT TSSSPSPSPS PSLPYKYNVA AFDQNIQATT 240 NDLHHNYEQV SCFSIFPTPP TFSLIDPGSD VSLPPPPTIV SHLLHAGAGA WNHL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-30	89	195	62	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011097656.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ050817	5e-51	KJ050817.1 Sesamum indicum clone TilSSR_22018 microsatellite Sesame_22018 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097656.2	1e-110	NAC domain-containing protein 21/22-like
Swissprot	Q84TE6	1e-55	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	H6VQ89	7e-64	H6VQ89_CAMSI; NAC transcription factor
STRING	Migut.M01566.1.p	4e-63	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56010.1	5e-57	NAC domain containing protein 1

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]