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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011097486.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 205aa MW: 22102.6 Da PI: 10.2575 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.3 | 4.8e-12 | 31 | 77 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h+e+ErrRR+riN +++L+++lP+ K +Ka+ L +Av+ +++L XP_011097486.1 31 NSHKEAERRRRKRINAHIATLKSVLPNV-----IKTDKASLLGEAVRRVREL 77 68*************************7.....59***********999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.173 | 28 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.6E-13 | 31 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-9 | 31 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-12 | 32 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.56E-4 | 32 | 79 | No hit | No description |
SMART | SM00353 | 3.5E-10 | 34 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 3.62E-5 | 120 | 188 | No hit | No description |
CDD | cd04873 | 4.40E-4 | 121 | 187 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 5.9E-5 | 121 | 170 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MSSSATENVE NGKLHSTRSI ADEAKAAAAS NSHKEAERRR RKRINAHIAT LKSVLPNVIK 60 TDKASLLGEA VRRVRELKKA AAVAATEETG GCDLTWKVMF PSETDEVKVW QCDNSGLIKA 120 TVCCEDRPEM VVELIRALKA VEAKVVRAEM STVGGRTRSV LWVRLGVGGE SDVGLGLGKL 180 RRALKMVVDK PVQMGPKHCS AVSGS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011097486.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097486.2 | 1e-145 | transcription factor bHLH30-like | ||||
TrEMBL | A0A2G9G238 | 4e-74 | A0A2G9G238_9LAMI; Uncharacterized protein | ||||
STRING | XP_009605433.1 | 1e-57 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7283 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 3e-21 | bHLH family protein |