PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011097469.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family AP2
Protein Properties Length: 494aa    MW: 53938.5 Da    PI: 6.5572
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011097469.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.71.7e-14211270155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  XP_011097469.1 211 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWG 270
                     57*******************666664478446**********99*************98 PP
2AP249.98.1e-16313364155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  XP_011097469.1 313 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 364
                     57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.75E-17211280IPR016177DNA-binding domain
CDDcd000182.40E-22211280No hitNo description
PfamPF008472.0E-11211270IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-16212279IPR001471AP2/ERF domain
SMARTSM003802.8E-28212284IPR001471AP2/ERF domain
PROSITE profilePS5103219.137212278IPR001471AP2/ERF domain
PRINTSPR003672.1E-6213224IPR001471AP2/ERF domain
CDDcd000188.92E-12313374No hitNo description
PfamPF008474.2E-10313364IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18313374IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-18314373IPR001471AP2/ERF domain
PROSITE profilePS5103219.151314372IPR001471AP2/ERF domain
SMARTSM003807.7E-32314378IPR001471AP2/ERF domain
PRINTSPR003672.1E-6354374IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MAPDNNWLSF SLSSMEMLNP SSQPAAAMLH SSSADSHHFY SFADNFYANG WATQKPQAMY  60
GEAENHQVYM QPPPKLEDFF AGGDSTETQD SSLTHIYDHQ TAGGGAAFFG NGEHQDLKTF  120
TGFQAFSANS GSEVNDSAFG GQTQSPVESG SELVAYSQCP ITASTTSNAL SLGVNNSSTA  180
LCAENNNNTA IVSADSESCK KIADTFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQA  240
RKGRQVYLGG YDKEDKAARA YDLAALKYWG PTATTNFPIS NYTKELEEMK HVTKQEFIAS  300
LRRKSSGFSR GASIYRGVTR HHQQGRWQAR IGRVAGNKDL YLGTFATEEE AAEAYDIAAI  360
KFRGVNAVTN FEMSRYDVEA IAKSPLPIGG TAKRLKLSLE AEEKLPLSTA LQTPCSSNSS  420
SSISFSAIQP ASTIPCGVPY DTTAPFYHHN LFHHLNSGNL AASIDNSGPV SSMVTSVNLM  480
PSPPEFFIWP HQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011097469.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097469.10.0AP2-like ethylene-responsive transcription factor AIL6 isoform X1
SwissprotQ52QU21e-161AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A2G9GKN60.0A0A2G9GKN6_9LAMI; Uncharacterized protein
STRINGXP_009603183.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-157AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]