PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011096994.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | NAC | ||||||||
Protein Properties | Length: 314aa MW: 35249.7 Da PI: 6.2941 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.9 | 6.6e-56 | 5 | 130 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL +kv++ ++++ +++++vd++k+ePwdLp+k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++ XP_011096994.1 5 LPPGFRFHPTDEELITYYLSNKVSDFDFTT-RAVADVDLNKCEPWDLPAKASMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFR- 97 79*************************999.88***************999999****************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ lvg+kktLvfy+grapkgekt+Wvmheyrl XP_011096994.1 98 GNVLVGMKKTLVFYRGRAPKGEKTNWVMHEYRL 130 99*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.5E-65 | 3 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.089 | 5 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-29 | 6 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MEENLPPGFR FHPTDEELIT YYLSNKVSDF DFTTRAVADV DLNKCEPWDL PAKASMGEKE 60 WYFFSLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIFRGNV LVGMKKTLVF YRGRAPKGEK 120 TNWVMHEYRL QNNLAFKPTK EEWVVCRVFQ KSSTVKKPQQ TPSSPPSQDS PCDTTAMVNE 180 LGDIELPNFG SMGMALPSSP NIALQNYNSG TNMMNWNAAT EAAAAVSNSL PSLTWPLLST 240 NLSMNSLLLT ALQLRGHQPR AAADNYSFMP QGSVSQLGNE FVSNFNMGSS SRVLDSVPQQ 300 PPSEQPYDVD SNIW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-57 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-57 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-57 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-57 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-57 | 4 | 157 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-57 | 4 | 157 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00364 | DAP | Transfer from AT3G18400 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011096994.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096994.1 | 0.0 | NAC domain-containing protein 92 | ||||
TrEMBL | A0A2G9HGW4 | 1e-176 | A0A2G9HGW4_9LAMI; Uncharacterized protein | ||||
STRING | POPTR_0015s03700.1 | 1e-148 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 2e-99 | NAC domain containing protein 58 |