PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011096890.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 297aa    MW: 33350.4 Da    PI: 4.5961
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011096890.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.21.9e-10176220655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++ r+RR++i ++ +eL +l+P       +K++ ae+L+ A +YIk+Lq
  XP_011096890.1 176 SIAARQRRRKITEKTQELGKLVPGG-----RKMNTAEMLQAAYKYIKYLQ 220
                     6788*******************96.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.554170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.46E-10173223No hitNo description
Gene3DG3DSA:4.10.280.103.8E-13173232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-12174229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-8176220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MALSYYSNWG AFQQLDADIM SFVDPLQTEA ELPPEPLPFP NIDHLFETND LFYSECSNSL  60
LYDFSTSSTG VTSDNLNCIP TQPCSLQQEF EPHQHNPKRQ KAAGCGYEDI YTQMFNPPHF  120
NGLVPNTCLT QLQDYLPTSE VVVLPLPDFS TPPGFSYSSE SPKKEASAGG SLSAQSIAAR  180
QRRRKITEKT QELGKLVPGG RKMNTAEMLQ AAYKYIKYLQ AQVGVLESMS SNNQENREGF  240
ESDDELRVLL ESPLIQEKLY STERCLVPAK FVQHLSSDHE IVKSNPQLLP LIVKQEQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011096890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554086.10.0transcription factor bHLH52
TrEMBLA0A2G9G0221e-106A0A2G9G022_9LAMI; Uncharacterized protein
STRINGMigut.M01923.1.p3e-85(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38562246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.12e-25bHLH family protein