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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011096762.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | Trihelix | ||||||||
Protein Properties | Length: 337aa MW: 37489.2 Da PI: 8.5858 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 53.3 | 7.4e-17 | 23 | 108 | 2 | 79 |
trihelix 2 WtkqevlaLiearr........emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 W qe+++Liea++ +++e+++rgk ++ +W++v +++++ g+ rs++qC++kw+nl +++kk++e e++ +++ ++ XP_011096762.1 23 WNLQETMVLIEAKKmddqrrmkRVGESSERGKPAELRWKWVEDYCWKNGCLRSQNQCNDKWDNLMRDFKKVREYERRVAERGGEEK 108 **************666655555555555689********************************************9866555444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.713 | 15 | 87 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 8.0E-11 | 22 | 114 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MDLTMANQGG NNNMLRDYRK GNWNLQETMV LIEAKKMDDQ RRMKRVGESS ERGKPAELRW 60 KWVEDYCWKN GCLRSQNQCN DKWDNLMRDF KKVREYERRV AERGGEEKSY WRIDKNERKD 120 NNLPSNMLPQ IYEALVEVVE RKGQREAAAS GGAGSSRANV VPATSIVEKS AASHVLGHLS 180 MPPPVQQYPI IQAPAMLLPL PPPAQAPAEP PTIPSSQPLP AVDSETSEYS DSPAKRRKRG 240 SGGGDGEGTS GGVGTLEEVG SAISKSASII AEAIRSCEER EERRHREVVS LQQRRLEIEE 300 SKAEMNRQGI NGLVDAINKL ANSILALAAH KDQSTSK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011096762.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096762.1 | 0.0 | trihelix transcription factor ASR3 isoform X1 | ||||
TrEMBL | A0A2G9HYY0 | 1e-160 | A0A2G9HYY0_9LAMI; Transcription factor GT-2 | ||||
STRING | Gorai.009G150000.1 | 1e-133 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4821 | 22 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35640.1 | 1e-57 | Trihelix family protein |