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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011096635.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | ARF | ||||||||
Protein Properties | Length: 903aa MW: 99149.8 Da PI: 6.4422 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.3 | 7.1e-24 | 129 | 230 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d+++++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ XP_011096635.1 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHNNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 219 99*****************************8544444..48************************************************..889 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ XP_011096635.1 220 KNQLLLGIRRA 230 9999****997 PP | |||||||
2 | Auxin_resp | 121.6 | 5.7e-40 | 255 | 338 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k XP_011096635.1 255 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 338 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.06E-49 | 113 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.2E-42 | 122 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.51E-21 | 128 | 229 | No hit | No description |
PROSITE profile | PS50863 | 12.605 | 129 | 231 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-24 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-22 | 129 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.9E-35 | 255 | 338 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 4.05E-7 | 763 | 843 | No hit | No description |
Pfam | PF02309 | 3.0E-7 | 766 | 857 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 24.692 | 768 | 852 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 903 aa Download sequence Send to blast |
MKLSSAGLNQ QSPEAGDKDC LNSELWHACA GPLVSLPSIG SHVVYFPQGH SEQVAASTNK 60 EVDAQIPNYP SLPPQLICQL HNVTMHADIE TDEVYAQMTL QPLSPQEQKE VSFLPADLGA 120 PSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF SQQPPAQELI ARDLHNNEWK 180 FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRPQTVMPSS 240 VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF 300 RMLFETEESS VRRYMGTITG ISDLDPVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP 360 LTTFPMYPSP FALRLKRPWP PGLPSFTGIK TTDMGLNSPL MWLRGDVVDR GMQSLNQGMG 420 ATPWMQPGLD SSVLGMQNDI YQAMAAAAVQ DMRVVDPSKQ MLSSIMQFQQ PQAISGRPAS 480 FIQPQILQQS QPSAPFLQNL PGSQSQASPQ SHANLLQQQL VHQNSFNNVQ IQHQHQQSTP 540 MQHVIGSQHV STVEPILSQF SANSQAQSES MQSVSSMSQN FSDSNVKPVA GNITSPLHSL 600 LGSVTQDETS NHLNMPRSSN LLSSNGWPTK RVALDPLISG GISQAITPQI DQLGPSNTNV 660 TPNPVSLPPF PGRECLIEQE ASNDPQNHFL FGVNIDSSPL LMQNGIPNLK AVGSDSDNAT 720 VVFASSSFMS SSGADYSLNP TVTSSSCLDE SGFLLSSDNV GHVNPPNRTF VKVYKSGSFG 780 RSLDISKFSS YHELRSELAQ MFGLEGQLED PLRSGWQLVF VDRENDVLLL GDDPWPEFVN 840 SVWCIKILSP QEVQEMGKRG LELLNSVPIQ KLPLPNGTCD GFANRQEARN MSAGIPSVGT 900 LDF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-163 | 18 | 359 | 48 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011096635.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096635.1 | 0.0 | auxin response factor 6 isoform X1 | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | A0A2G9GUS9 | 0.0 | A0A2G9GUS9_9LAMI; Auxin response factor | ||||
STRING | cassava4.1_001357m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2368 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.2 | 0.0 | auxin response factor 8 |
Publications ? help Back to Top | |||
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