PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011096599.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family TCP
Protein Properties Length: 481aa    MW: 51534.2 Da    PI: 7.85
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011096599.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.65.2e-39822402136
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg..... 88 
                      g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a  +i el+  s++ +      ++e++ss++++++ g     
  XP_011096599.1  82 SGGKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLLKAAASSIAELPPMSNPFPDTPkqlSDEKRSSTGGSDHLGfdsae 176
                     689*************************************************************5554422222233333333333333377777 PP

             TCP  89 ...............kaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136
                                    +  ks+a+s+ s++s+ s l+l++ esr kar+ra+er +ek + k+++
  XP_011096599.1 177 vnmdgggadpnyshqQVTKSSACSSTSETSKGSGLSLSRsESRIKARERAKERVAEKEKEKEND 240
                     88888889999998566666669999*******************************9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-4183236IPR005333Transcription factor, TCP
PROSITE profilePS5136931.53184142IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.68216235IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MEVDEIQCKF PRISNGNGRL DSTKLGHSQK MDDQYQDEEE EGENKKGPTN GGVRGGGVDL  60
GGGVGRFYGW PSSRIVRVSR ASGGKDRHSK VLTSKGLRDR RVRLSVNTAI QFYDLQDRLG  120
YDQPSKAVEW LLKAAASSIA ELPPMSNPFP DTPKQLSDEK RSSTGGSDHL GFDSAEVNMD  180
GGGADPNYSH QQVTKSSACS STSETSKGSG LSLSRSESRI KARERAKERV AEKEKEKEND  240
SSHVASLNPI SQTTSFTELL SGGINNVNNS HHNTTTSPNS SVHQNPNSSG GTTNESNFFL  300
KSPRQWSSTP MDYFTSGLLG PPAARPGQMQ LANPFAPAAS PLFSVTGEHQ PELQHFSFVP  360
DHFVPVVNAA AGGNGSSNNN HHNGSSEYNL NFTISSSANS SGLAGFNRGT LQSNSSSPSL  420
LPHLQRFPDG SPPSFFIGTA ASVENHHQFL SGYDARLQLC YGDAHANNGG RHSGQKGKGK  480
N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-2389143155Putative transcription factor PCF6
5zkt_B4e-2389143155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011096599.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096599.10.0transcription factor TCP2-like
RefseqXP_011096600.10.0transcription factor TCP2-like
RefseqXP_020554008.10.0transcription factor TCP2-like
TrEMBLA0A022QZI80.0A0A022QZI8_ERYGU; Uncharacterized protein
STRINGMigut.M00891.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.26e-38TCP family protein