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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011096339.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 671aa MW: 73977.2 Da PI: 6.1079 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.3 | 5.4e-08 | 228 | 247 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C ffa+ G+C +G++C+F H XP_011096339.1 228 PCEFFAK-GWCIRGNSCRFLH 247 8******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 6.8E-6 | 223 | 247 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.042 | 223 | 250 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.8E-6 | 228 | 247 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 671 aa Download sequence Send to blast |
MASVMPPPPP KPSTSGIDDG EDEIEYEEIE VEEEVEVEEE VGEELEGEDV EEGGEHEIEE 60 GLTPACDEKQ GTATVQMLEP AGHPKQKQSG SASQSISISN PPTGIPKIQT STGGLKISGS 120 SEKEELHVYG ERTSRDNDPK APFYQIGEVN RGRRSPFIGD VNTALTGDAS SQKDNAINSV 180 TTETNHRAAE PVAKIMQMSP RLHVPQIRLR DPSPSAEFDR DNKKLRIPCE FFAKGWCIRG 240 NSCRFLHIGD GSAVVKTTKG TYEGNFSGSS VASHDNHHNT RISAFGSTLQ EMIGKESDIE 300 HKGPRSTELS HSHSRPPLSF GSPSWNTSAL GTQNLLKSGV ERHASVSSSF KRSISSVSGS 360 ESERLSENHV FKDTDLAKYT SKISYDWEPS APFRPSHAIT RNLLLKKNLY NPIRDSIEHT 420 GVKDGQVKLS SSDQGSNKNV DVPSNSSREE KLLNSVHIEG TVKDNIFLLS SDNKLNDNTR 480 DKAELKVDGS DNNNEADVDL KGADQLQSES KAFKYFQSAL IEFVKELVKP TWREGLMSKD 540 AHKLIVKKAV DKVLSTLQPN QIPSTGESVN LYLSSSKPKL AKLVEGYIDK CDLTWICRNS 600 SARQGMSSCK LDQYNDEMKR TRAGILQFLH CNIFVFTGRF GSRVRQSLHG VANDENNFWP 660 KLFRPAVFAA S |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011096339.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020553960.1 | 0.0 | protein FRIGIDA-ESSENTIAL 1 isoform X1 | ||||
Refseq | XP_020553961.1 | 0.0 | protein FRIGIDA-ESSENTIAL 1 isoform X1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3004 | 21 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 3e-21 | C3H family protein |