PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011096215.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family B3
Protein Properties Length: 858aa    MW: 95041.2 Da    PI: 7.168
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011096215.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.84.1e-18330429198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ +  e++
  XP_011096215.1 330 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDVKGKEWVFQFRFwpNNNSRMYVLE-GITPCIQSMQLQAGDVVTFSRLE-PEGK 422
                     89**************************555566778***************9989999999***9.********************765.7887 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     lv++ ++
  XP_011096215.1 423 LVMGGRK 429
                     8887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-29327431IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-19327425IPR015300DNA-binding pseudobarrel domain
CDDcd100179.09E-22328429No hitNo description
PROSITE profilePS5086310.969330431IPR003340B3 DNA binding domain
SMARTSM010199.8E-21330431IPR003340B3 DNA binding domain
PfamPF023623.1E-15330428IPR003340B3 DNA binding domain
PROSITE profilePS5105013.529558608IPR011124Zinc finger, CW-type
PfamPF074961.7E-10563605IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 858 aa     Download sequence    Send to blast
MSSSTTKVCF NSNCKEASDK WRRGWRRRTG EYAHLCDRCA SAYEDGNFCE TFHLNSSGWR  60
CCESCGKQIH CGCIVSFHMF VLLDAGGIEC LSCAKKSYIL TPNPAWPPPS HFLPSQPERM  120
KDLSVKTWSA IAGSGPVPWR QAPSLFSRPD TQSNVQSRMP FEIDVSGGID RHHICERLSN  180
ASPEMKQERS YERFVNGKLR LGPSETLQNG NAGLDMKEQP YPFVNDFKPV FLKNDSSTSN  240
LSARASSSKI TDDAQLSAII SQPSAVSSPV GRQVSHIVVD SSGESQIRNG KARGDGRGRN  300
QLLPRYRPQI TNEELQQISS DSKSVITPLF EKMLSASDAG RIGRLVLPKK CAEAYFPPIS  360
QPEGLPLKVQ DVKGKEWVFQ FRFWPNNNSR MYVLEGITPC IQSMQLQAGD VVTFSRLEPE  420
GKLVMGGRKA SAIPSSDQGD EVTLIGTDAS NPGDGSARHK SGDVISVNSQ RKEKILEDKP  480
VIHSKRKSSN FGVKNKRLRI DNEDVIELKL TWKEAQGLMR PPAKIVPSFF VVEGCEFEEF  540
EEAAPVIGRP TILGIDHFGE KIQWVQCEDC FKWRKVPADA LLPSRWICSE NVWDLDRSLC  600
SADEELTKEQ LEHLLPAMNK DASRKEDITD QDADLFVALE GLDALANLAI QGEGEGLPIS  660
SESRTKHPRH KPGCTCIVCL QPPSGKGSKH SQSCDCVVCS SLKRRFRTLM ERREKKQLEK  720
EGDSSSQSLQ WQQSPEKLQS VDTHAGTDAG ISGLNQEEMG KWGYLDEANG RKSSTSPLKG  780
QIDLNIQPDR EEELSPSSDS GAMKHVLPGS ADRFFRQQRS LGSDVIADLV GKQMQQDGIG  840
GANFISCMAL DSSHQKTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-623084311124B3 domain-containing transcription repressor VAL1
5yzz_C2e-623084311124B3 domain-containing transcription repressor VAL1
5z00_C2e-623084311124B3 domain-containing transcription repressor VAL1
5z00_G2e-623084311124B3 domain-containing transcription repressor VAL1
5z00_K2e-623084311124B3 domain-containing transcription repressor VAL1
5z00_M2e-623084311124B3 domain-containing transcription repressor VAL1
6j9a_A2e-623084312125B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011096215.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096215.10.0B3 domain-containing protein Os07g0563300
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A2G9GZX80.0A0A2G9GZX8_9LAMI; Uncharacterized protein
STRINGMigut.M01204.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71282126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-174HSI2-like 1