PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011096172.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 461aa MW: 50531.6 Da PI: 5.2319

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011096172.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.8	1.3e-05	351	388	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L XP_011096172.1 351 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 388 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.973	339	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.08E-5	349	392	No hit	No description
SuperFamily	SSF47459	6.15E-10	349	393	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-8	353	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MASEEFQGGV CGGNWWNPSR NLFGSPCSLP TNDIGSFGWS NYDLIMDMKA PRSNDESVGS 60 AADGRKPQQE SAANGTMSVD STLQMMGINL SSSTTPDDWN QDFLHDSGRS DGNYTNILQD 120 SSMNYRQETR VDYPQIHKNW SSNNFSEDSS VNSFKQANQT FPLEHHQQFN SVTSSSDCVT 180 TCQGLSAGFP LNSTSYSYTS SLLQTLFDTD SQPQQSLLDN QAMNYSSAAT DTLNSDEFLA 240 SLAKVSPAED PSFTRQQPTN HLPFTNNAPL WKATAGLSTV PTNFLPSAQS GQFPPSSLNI 300 KIPNLPSFSQ KHQNGEARDL ASLAKKAGNE PATFKRPRIE TPSPLPTFKV RKEKLGDRIT 360 ALQQLVSPFG KTDTASVLHE AIEYIKFLHD QVLSTPYLKN GSPSSQRQQA ADYSRVNKDQ 420 QGLIQDLKSR GLCLVPISST FPVASETSSD FWTPTFGGSF K

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MASEEFQGGV CGGNWWNPSR NLFGSPCSLP TNDIGSFGWS NYDLIMDMKA PRSNDESVGS  60
AADGRKPQQE SAANGTMSVD STLQMMGINL SSSTTPDDWN QDFLHDSGRS DGNYTNILQD  120
SSMNYRQETR VDYPQIHKNW SSNNFSEDSS VNSFKQANQT FPLEHHQQFN SVTSSSDCVT  180
TCQGLSAGFP LNSTSYSYTS SLLQTLFDTD SQPQQSLLDN QAMNYSSAAT DTLNSDEFLA  240
SLAKVSPAED PSFTRQQPTN HLPFTNNAPL WKATAGLSTV PTNFLPSAQS GQFPPSSLNI  300
KIPNLPSFSQ KHQNGEARDL ASLAKKAGNE PATFKRPRIE TPSPLPTFKV RKEKLGDRIT  360
ALQQLVSPFG KTDTASVLHE AIEYIKFLHD QVLSTPYLKN GSPSSQRQQA ADYSRVNKDQ  420
QGLIQDLKSR GLCLVPISST FPVASETSSD FWTPTFGGSF K

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011096172.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096172.1	0.0	transcription factor bHLH112 isoform X2
TrEMBL	D7SSM5	1e-159	D7SSM5_VITVI; Uncharacterized protein
STRING	VIT_00s0274g00070.t01	1e-160	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	2e-54	bHLH family protein