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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011096101.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 726aa MW: 79594 Da PI: 5.8493 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.9 | 9.7e-20 | 58 | 113 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+ qVk+WFqN+R+++k XP_011096101.1 58 KKRYHRHTQHQIQEMESFFNECPHPDDKQRKELGRRLGLEPLQVKFWFQNKRTQMK 113 688999***********************************************998 PP | |||||||
2 | START | 222.4 | 1.4e-69 | 246 | 467 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 ela +a++el+++a+ +ep+W s e + ++e++++f+++ + ++ea+r+s+vv+m++ +lve+l+d++ qW+ + +a tl XP_011096101.1 246 ELAVAAMEELIRMAQTGEPLWIPSTdnsaEVLSEEEYVRTFPRGIGpkplgLKSEASRESAVVIMNHINLVEILMDVN-QWSSVFSsivsRAVTL 339 57899******************9988889999**********999********************************.**************** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 ev+s+g galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+d+ q p s+ R++++pSg+li++++ng+skvtwvehv XP_011096101.1 340 EVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHTDGTWAVVDVSLDNLQRPA---SISRCRRRPSGCLIQELPNGYSKVTWVEHV 431 ************************************************************97...7***************************** PP E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++++r +h+++r+lv+sgla+gak+wvatl+rqce+ XP_011096101.1 432 EVDDRAVHSIYRPLVNSGLAFGAKRWVATLDRQCER 467 **********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.76E-19 | 42 | 115 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-21 | 43 | 113 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.487 | 55 | 115 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-18 | 56 | 119 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.10E-18 | 58 | 116 | No hit | No description |
Pfam | PF00046 | 2.0E-17 | 58 | 113 | IPR001356 | Homeobox domain |
SuperFamily | SSF55961 | 5.95E-39 | 237 | 469 | No hit | No description |
PROSITE profile | PS50848 | 47.98 | 237 | 470 | IPR002913 | START domain |
CDD | cd08875 | 1.06E-132 | 241 | 466 | No hit | No description |
SMART | SM00234 | 1.2E-69 | 246 | 467 | IPR002913 | START domain |
Pfam | PF01852 | 3.8E-58 | 247 | 467 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.2E-7 | 343 | 467 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 3.02E-25 | 487 | 718 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 726 aa Download sequence Send to blast |
MFQPNLFESH HHLLDMGHKT PENEMDLIRD DEYESKSGTD IMEAPSGDDQ DPNQRPKKKR 60 YHRHTQHQIQ EMESFFNECP HPDDKQRKEL GRRLGLEPLQ VKFWFQNKRT QMKAQHERHE 120 NSQLRAENEK LRAENIRYKE ALSNATCPNC GGPAAIGEMS FDEQHLRIEN ARLREEIDRI 180 SGIAAKYVGK PMLSYPHLSP GGSRSLDLGV GNYGPQTGMS GEIYGAADLL RSVSGPTDAD 240 KPVIIELAVA AMEELIRMAQ TGEPLWIPST DNSAEVLSEE EYVRTFPRGI GPKPLGLKSE 300 ASRESAVVIM NHINLVEILM DVNQWSSVFS SIVSRAVTLE VLSTGVAGNY NGALQVMTAE 360 FQVPSPLVPT RENYFVRYCK QHTDGTWAVV DVSLDNLQRP ASISRCRRRP SGCLIQELPN 420 GYSKVTWVEH VEVDDRAVHS IYRPLVNSGL AFGAKRWVAT LDRQCERLAS VMANNISAGD 480 VGVISSPEGR KSMLKLAERM VMSFCTGVGA STAHTWTTLS GSGADDVRVM TRKSMDDPGR 540 PPGIVLSAAT SFWLPVPPKR VFDFLRDENS RSEWDILSNG GLVQEMAHIA NGRDPGNSVS 600 LLRVNSANSS QSNMLILQES STDSTASYVI YAPVDIVAMN VVLSGGDPDY VALLPSGFAI 660 LPDGPTNQAG GAPEVGSGGS LLTVAFQILV DSVPTAKLSL GSVATVNSLI KCTVERIKGA 720 VLCENA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011096101.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096101.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 | ||||
Refseq | XP_011096102.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 | ||||
Refseq | XP_011096103.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 | ||||
Refseq | XP_020554106.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 | ||||
Refseq | XP_020554107.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 | ||||
Swissprot | Q8RWU4 | 0.0 | ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1 | ||||
TrEMBL | A0A2G9GCJ2 | 0.0 | A0A2G9GCJ2_9LAMI; Uncharacterized protein | ||||
STRING | Migut.M01293.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA932 | 24 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21750.2 | 0.0 | HD-ZIP family protein |