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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011095725.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | NF-YC | ||||||||
Protein Properties | Length: 273aa MW: 30457.4 Da PI: 6.5093 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 176.9 | 2e-55 | 85 | 189 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q i+++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdfl XP_011095725.1 85 QLQAFWANQmqeIDQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFL 179 89******9777789******************************************************************************** PP NF-YC 93 vdivprdelk 102 vdi+prdelk XP_011095725.1 180 VDIIPRDELK 189 *******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.2E-34 | 73 | 179 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.0E-37 | 99 | 171 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.4E-21 | 107 | 170 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MDHVDQRQQL THQSQQQQQP GVGVVSGSGP MAYSTPPYQT ASMLATGTPA GTVSSPTQPP 60 TGFAPQQQLA YHQAHHFHNQ QQQQQLQAFW ANQMQEIDQT TDFKNHSLPL ARIKKIMKAD 120 EDVRMISAEA PVIFAKACEM FILELTLRSW IHTEENKRRT LQKNDIAAAI SRTDVFDFLV 180 DIIPRDELKE EGLGITKAAI PLVASTTDSL PYYYVPPQPQ VGAPGMIMGK PVDQAALYAN 240 QQPRPPLPFM PWPQSHIQHP SQQPPPQQQP SDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-58 | 93 | 185 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 157 | 163 | RRTLQKN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011095725.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095726.1 | 0.0 | nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_011095727.1 | 0.0 | nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A4D9B5N4 | 1e-133 | A0A4D9B5N4_SALSN; Uncharacterized protein | ||||
STRING | cassava4.1_014024m | 1e-123 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3422 | 24 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 5e-70 | nuclear factor Y, subunit C2 |