PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011095658.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family WRKY
Protein Properties Length: 723aa    MW: 78070 Da    PI: 6.5825
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011095658.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.52.4e-32312369260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g Hnh+k
  XP_011095658.1 312 EDGYNWRKYGQKHVKGSEYPRSYYKCTHPNCPVKKKVERSH-EGHITEIIYKGAHNHPK 369
                     8****************************************.***************85 PP
2WRKY104.27.3e-33516574159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  XP_011095658.1 516 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERASHDLKSVITTYEGKHNHD 574
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-28308370IPR003657WRKY domain
SuperFamilySSF1182901.28E-25310370IPR003657WRKY domain
SMARTSM007742.4E-36311369IPR003657WRKY domain
PfamPF031066.7E-25312368IPR003657WRKY domain
PROSITE profilePS5081123.353312370IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-37501576IPR003657WRKY domain
SuperFamilySSF1182901.44E-28508576IPR003657WRKY domain
PROSITE profilePS5081138.733511576IPR003657WRKY domain
SMARTSM007746.6E-38516575IPR003657WRKY domain
PfamPF031065.0E-25517574IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MGGFDDHVAI MGDWMPPSPS PRAFFSSMIS DDVAARPTAN SECENKSVPP FQGPEGHDQK  60
DQIQASVGGD EPSNSNAPVE PKLSSRAGLV ERMAARAGFN APRLNTESIR AADLSKKPEV  120
LSPYLTIPPG LSPTTLLDSP VFLSNSLVLP SPTTGKFLFA PSGNNQISSL MTGNPDKGKE  180
NTFEVTNASS FAFKPVAESA SFPYFNAANK VNPSGFAPHS FSGVSFSVHP NTMPLHQSTE  240
PVKVHSDNNN ALFQQANLSE SHLENNRGSN LVPEQTYNPV GDAEHSPPFD EPHEDGDQRS  300
SEDPNVGGSP AEDGYNWRKY GQKHVKGSEY PRSYYKCTHP NCPVKKKVER SHEGHITEII  360
YKGAHNHPKP PPNRRSALGS SNALDDVQLD SEQPGTGPDG GLVWSAMQQG NVAGAPTPAL  420
PGQEYNNGAN ATLRTQSGTQ YESADGVDRS STFSNDEDDD DRATHGSVSL GYDGEGDELE  480
SKRRKLETYT PEMSGNTRAI REPRVVVQTT SEVDILDDGY RWRKYGQKVV KGNPNPRSYY  540
KCTSAGCNVR KHVERASHDL KSVITTYEGK HNHDVPAARN SGHSNSGLQN TLPSRQAPSA  600
SSHIHRPEPS QIRGSIPRYE RPSMGSFGNL SRPQLGPGPG YGFGMNQPGF PGLGLGPNQG  660
KLPVMPVNPY LGHQPRPVND IGGYMLPKGE PKVEPVTDTG LNSSNGASVY QQLMNRLPLG  720
PQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36312577878Probable WRKY transcription factor 4
2lex_A2e-36312577878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011095658.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095658.10.0probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A0D5YAF40.0A0A0D5YAF4_SALMI; WRKY protein
STRINGVIT_19s0015g01870.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37112341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-180WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]