PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011094946.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 405aa    MW: 43721.8 Da    PI: 4.8011
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011094946.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.84e-164085147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+++Ed  l ++v  +G ++W++Iar ++ gR++k+c++rw + 
   XP_011094946.1 40 KGPWSPDEDAMLSQLVGNFGARNWSLIARGIP-GRSGKSCRLRWCNQ 85
                     79******************************.***********985 PP
2Myb_DNA-binding58.12.1e-1892136147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T eEd ++++a++ +G++ W++Iar ++ gRt++ +k++w++ 
   XP_011094946.1  92 RKPFTDEEDRIILQAHAIHGNK-WASIARLLP-GRTDNAIKNHWNST 136
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.6583486IPR017930Myb domain
SuperFamilySSF466893.95E-3037133IPR009057Homeodomain-like
SMARTSM007171.3E-133988IPR001005SANT/Myb domain
PfamPF002491.8E-154085IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-254193IPR009057Homeodomain-like
CDDcd001675.27E-134284No hitNo description
PROSITE profilePS5129427.8887141IPR017930Myb domain
SMARTSM007178.9E-1891139IPR001005SANT/Myb domain
PfamPF002495.7E-1692136IPR001005SANT/Myb domain
CDDcd001671.24E-1394137No hitNo description
Gene3DG3DSA:1.10.10.604.5E-2494140IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
METDTPATLQ VQADGGAEEE NSVMLGDGAR VTKRPLDRVK GPWSPDEDAM LSQLVGNFGA  60
RNWSLIARGI PGRSGKSCRL RWCNQLDPAV KRKPFTDEED RIILQAHAIH GNKWASIARL  120
LPGRTDNAIK NHWNSTLRRR CMELGKSKLE SSNVAEDASV EKSKASSEET PSCGDANSFK  180
SSEGKDVSSL ELIDDSPHEE RAQSEVQLCE KSVVPPTLFR PVARISAFSV YNPLDGAENV  240
CLSPRLVSFQ VPYLQASNPD VGICKLLEGA YADLLVPHRC GHGCCEISSK VAPVGSLLGP  300
EFIDYTEPPS FASHELAALA ADISNVAWSR SGLESSSIKA MDNTACGLFC GSSNQQMRHF  360
EDSGENDNSS FEVGKSELTG ITPDALSASM SRQPLLTQDE VGGAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-42371404107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011094946.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094946.10.0transcription factor MYB1
SwissprotQ425751e-95MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A022RMW20.0A0A022RMW2_ERYGU; Uncharacterized protein
STRINGMigut.J00247.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.16e-94myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]