PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

C3H

Protein Properties

Length: 369aa MW: 40884.2 Da PI: 7.6704

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011094664.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.9	8.5e-09	132	153	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f+r G Ck+Gd C +aHg XP_011094664.1 132 SACPDFRR-GACKRGDACEYAHG 153 67****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	2.9E-5	128	154	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.235	129	155	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.1E-5	132	155	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.3E-7	132	153	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.118	163	187	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	19	163	186	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MMMMMMIGDH HTSNPTVQIP PWDYHYLEDP TAHIPSTHAN SPDASHHENA LAALQRYLPS 60 NKDDVVPSEH DDCIDDFDVP VDAFSCDNFR MFEFKVKKCA LARSHDWTEC PFAHPGEKAR 120 RRDPRKYHYS GSACPDFRRG ACKRGDACEY AHGVFECWLH PARYRTQPCK DGVHCRRRVC 180 FFAHTPEQLR VLPYTTSPDA SPGRVVQDSF LPMGLFGSSP NSTLYSPPPS SPTTGSPPVS 240 PTGSMSLNSV NKLTESMRCL QLNKMKMGLG LSGSPPSWAL GIGSPRSPPT IRPGFMSPPS 300 TPIRAQVGPG LSAFDAWGTC CEEEPVMERV ESGRELRERI YAKLGKENSL DRVGRFNSAG 360 RGLGQLTTS

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MMMMMMIGDH HTSNPTVQIP PWDYHYLEDP TAHIPSTHAN SPDASHHENA LAALQRYLPS  60
NKDDVVPSEH DDCIDDFDVP VDAFSCDNFR MFEFKVKKCA LARSHDWTEC PFAHPGEKAR  120
RRDPRKYHYS GSACPDFRRG ACKRGDACEY AHGVFECWLH PARYRTQPCK DGVHCRRRVC  180
FFAHTPEQLR VLPYTTSPDA SPGRVVQDSF LPMGLFGSSP NSTLYSPPPS SPTTGSPPVS  240
PTGSMSLNSV NKLTESMRCL QLNKMKMGLG LSGSPPSWAL GIGSPRSPPT IRPGFMSPPS  300
TPIRAQVGPG LSAFDAWGTC CEEEPVMERV ESGRELRERI YAKLGKENSL DRVGRFNSAG  360
RGLGQLTTS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011094664.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094664.1	0.0	zinc finger CCCH domain-containing protein 20-like
Swissprot	Q9M0G2	1e-108	C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBL	A0A2G9G4Z8	0.0	A0A2G9G4Z8_9LAMI; CCCH-type Zn-finger protein
STRING	Migut.E01548.1.p	1e-175	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1857	21	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	5e-99	C3H family protein

Publications ? help Back to Top
Dokládal L, et al. cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase. Front Plant Sci, 2015. 6: p. 985 [PMID:26617625] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]