PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011094651.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARF
Protein Properties Length: 690aa    MW: 75479.2 Da    PI: 7
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011094651.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.21.8e-24121222199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF+  + +
  XP_011094651.1 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFM--RAE 211
                     89****************************996555555..89***********************************************..448 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ l+v+++r+
  XP_011094651.1 212 NGDLCVGIRRA 222
                     8999****997 PP
2Auxin_resp1141.4e-37287370183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ a+++++F+vvY+Prast+eF+vk++ v++al+++++ GmRfkmafetedss++++ +Gt+++ + +dp+rWp+S+Wr+L+
  XP_011094651.1 287 AATLAANGQPFDVVYYPRASTPEFCVKASLVKTALQIRWCSGMRFKMAFETEDSSRISWfMGTISSAQVADPIRWPDSPWRLLQ 370
                     68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-38111226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-29114227IPR015300DNA-binding pseudobarrel domain
CDDcd100173.75E-21120221No hitNo description
PROSITE profilePS5086313.225121223IPR003340B3 DNA binding domain
PfamPF023621.5E-22121222IPR003340B3 DNA binding domain
SMARTSM010197.4E-22121223IPR003340B3 DNA binding domain
PfamPF065071.1E-32287370IPR010525Auxin response factor
PROSITE profilePS5174519.144604684IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MITFMESKEK MKEAEKCLDS QLWHACAGSM VQMPPVNSKV FYFPQGHSEH ASGNVDFRNC  60
PRVPAYVPCR VSTVKFMADP ETDEVFAKIR LVPITRNEDS FDDDAAVGIS ASENQDKPVS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT  180
PRRHLLTTGW STFVNHKKLV AGDSIVFMRA ENGDLCVGIR RAKRGTGGGP EMPTGWNPAA  240
GNSVVPYGGF SAFLGEEESK LSRNTNGYTI GNWTSRGRVK AEEVIEAATL AANGQPFDVV  300
YYPRASTPEF CVKASLVKTA LQIRWCSGMR FKMAFETEDS SRISWFMGTI SSAQVADPIR  360
WPDSPWRLLQ VTWDEPDLLQ NVKRVSPWLV ELVSNMPAIH LSPFSPPRKK LRLPQNSEFP  420
LDSQIPLPAF SGNHLLGSSN PFGCLPNNSP AGMQGARHAQ YGLSLSDLHL NKLQSSLFPV  480
GFLPPHRVPL PTGASNPIIP EPGSNENISC LLTMGNSTQG SKKSDNGKAA PFVLFGQTIL  540
TEKQISLSCS SDTVSPARTG NSSSGGNANK MGNTSDGSVP APNQNDAPDH SSCEGFQSEL  600
NLETGHCKVF MESEDVGRTL DLSLLGSYEE LYRKLASMFG TEISEMLNRV LYRDAAGAVR  660
QLGDEPFSNF MKTARRLRIL ADSSSDNVGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-82339132388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011094651.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094651.10.0auxin response factor 18
RefseqXP_011094652.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2G9GAL70.0A0A2G9GAL7_9LAMI; Auxin response factor
STRINGSolyc09g007810.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]