PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011094525.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 420aa MW: 45240.4 Da PI: 7.2335

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011094525.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.2	9.6e-16	237	282	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+++Lq XP_011094525.1 237 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLRQLQ 282 ***********************8.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.815	232	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.6E-18	236	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-18	236	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.44E-17	237	286	No hit	No description
Pfam	PF00010	2.3E-13	237	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.1E-18	238	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MNQCVPSWNF DHNSPPVPTL NLHAHSIDCA PPHVPSLECE VAELTWENGQ LTMHDLRTPR 60 VIDKLTRTSS LTKYNTWDKP CAGGTLESIV NQATRHPHPK SAVDGGVNTN NDLVPWFDHH 120 VALVNPTASP STAVTMDALV PCNNNIHIKD HNQEKLLQVL NPAPGEIGAC KVECSTCVGS 180 YGGDGGAHLE ADAPMSSMGI NSFRTNGSRQ TGDEEAKNKG NEKSSVSTKR SRAADVHNQS 240 ERKRRDKINQ RMKTLQKLVP NSSKTDKASM LDEVIEYLRQ LQAQVQMMGR INISSMMLPL 300 AMQQQLQMSM MPHMGMGIGM GMGMAGVMDM NAISHANGMP PVIPPTHPFM PLPSGDRMSA 360 PTGSTFPDPL SVFLACQSQP MAMDAYSRLA ALYQQMQQPP VGSAGSGSGS GSASGLGPKS

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MNQCVPSWNF DHNSPPVPTL NLHAHSIDCA PPHVPSLECE VAELTWENGQ LTMHDLRTPR  60
VIDKLTRTSS LTKYNTWDKP CAGGTLESIV NQATRHPHPK SAVDGGVNTN NDLVPWFDHH  120
VALVNPTASP STAVTMDALV PCNNNIHIKD HNQEKLLQVL NPAPGEIGAC KVECSTCVGS  180
YGGDGGAHLE ADAPMSSMGI NSFRTNGSRQ TGDEEAKNKG NEKSSVSTKR SRAADVHNQS  240
ERKRRDKINQ RMKTLQKLVP NSSKTDKASM LDEVIEYLRQ LQAQVQMMGR INISSMMLPL  300
AMQQQLQMSM MPHMGMGIGM GMGMAGVMDM NAISHANGMP PVIPPTHPFM PLPSGDRMSA  360
PTGSTFPDPL SVFLACQSQP MAMDAYSRLA ALYQQMQQPP VGSAGSGSGS GSASGLGPKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	240	245	ERKRRD
2	241	246	RKRRDK

Functional Description ? help Back to Top
Source	Description
UniProt	Required during the fertilization of ovules by pollen. {ECO:0000269\|PubMed:15634699}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011094525.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020550618.1	0.0	transcription factor UNE10-like
Swissprot	Q8GZ38	5e-79	UNE10_ARATH; Transcription factor UNE10
TrEMBL	A0A2G9GTZ3	1e-140	A0A2G9GTZ3_9LAMI; Transcriptional repressors of the hairy/E(Spl) family (Contains HLH)
STRING	XP_002511647.1	1e-118	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4367	21	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	3e-80	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]