PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011094408.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family Trihelix
Protein Properties Length: 529aa    MW: 59768.5 Da    PI: 7.1482
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011094408.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.88.1e-3093178187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  XP_011094408.1  93 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 178
                     8*************************************999*****************************98..55667*******85 PP
2trihelix54.82.5e-17386464283
        trihelix   2 WtkqevlaLiearremeerlr.rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                     W++ e+  Li +r+ me +++ rg++++ lWee++ km+  g  rs  +Ckekw+++n++  k+++ +k++    s+ c y++
  XP_011094408.1 386 WPECEITRLIHLRTGMEVKFQqRGASEEVLWEEIATKMACFGHDRSGLMCKEKWDSVNNYLLKCNKKRKEN----SKGCTYYQ 464
                     ********************95599****************************************999985....66788886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.08590153IPR001005SANT/Myb domain
PROSITE profilePS500906.9892151IPR017877Myb-like domain
CDDcd122031.99E-1993158No hitNo description
PfamPF138372.7E-2093179No hitNo description
PROSITE profilePS500906.144378443IPR017877Myb-like domain
SMARTSM007172.7382445IPR001005SANT/Myb domain
PfamPF138378.4E-13385467No hitNo description
CDDcd122031.51E-18386450No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MEDQYGMADL RQFISSRPLF PPIPQPPDLL SSHRGLNPPH PYDMLIFRSD STTTANTTNA  60
GGAAGSSSAA GPGGCFGGFE NGGGVGGDGG TGRWPRQETL TLLEIRSRLD PKFKEANQKG  120
PLWDEVSRIM SEEHGYQRSG KKCREKFENL YKYYKKTKEG KAGRQDGKHY RFFRQLEALY  180
GETNNSAASV AEAHLVGGSF HYNFPNKNTS LAGNQEALQG PKLSDTSLSL SNYSDADTSS  240
SDNSDDLNEG IADNESKNKK RRGKRSWKVK IKDFIDVQMK KLMDKQEAWM EKMMRTIEQK  300
EQERLLREEE WRKQDAARIE REHKFWASER AWIESRDAAL MDALQKLTGK ELRASTPEEL  360
IIRSLSENQN DDGSETMTNS VKGDIWPECE ITRLIHLRTG MEVKFQQRGA SEEVLWEEIA  420
TKMACFGHDR SGLMCKEKWD SVNNYLLKCN KKRKENSKGC TYYQSHESIS NQGGSGVYCD  480
TSEHGVNLDH TIRLNNHGNN SSPNTNTGNP MSDSCFRYFM GDAYGRIMD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257264NKKRRGKR
2258263KKRRGK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011094408.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094408.10.0trihelix transcription factor PTL
SwissprotQ9LZS01e-135PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A2G9G8M20.0A0A2G9G8M2_9LAMI; Transcription factor GT-2
STRINGVIT_08s0007g03820.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30632451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-117Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]