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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011094110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 240aa MW: 27648.2 Da PI: 4.533 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.8 | 8.3e-13 | 52 | 94 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er+RR+++N+++ Lr ++P+ +K++Ka+i + A+eYI+ L XP_011094110.1 52 VSERNRRKKLNERLYALRAVVPNI-----TKMDKASIIRDAIEYIQAL 94 57*********************7.....7****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.7E-17 | 44 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.653 | 45 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.62E-13 | 48 | 99 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.0E-17 | 51 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.3E-15 | 51 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-10 | 52 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MEDFDDYKNY WETGMFLQTE ELDSYFDEHI SAYYDSSSPE GTQSSLASKN IVSERNRRKK 60 LNERLYALRA VVPNITKMDK ASIIRDAIEY IQALHDEERR IQAEISELES GRATNFEYEQ 120 EITTFCSKPK RTRMENEYDY SAPRLMSSPI EVLELRVSNM GEKTIVVSLT CSKRTDTMVK 180 LCEIFESLKL KVITANITAF SGRLLKTVFL EADEEEKEDL RLKIEAAIAA LSDPDSPMSI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011094110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ378898 | 3e-33 | FQ378898.1 Vitis vinifera clone SS0AEB12YB22. | |||
GenBank | FQ386139 | 3e-33 | FQ386139.1 Vitis vinifera clone SS0AEB2YO13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094110.1 | 1e-176 | transcription factor bHLH35 | ||||
Swissprot | Q2HIV9 | 2e-85 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A2G9GQW6 | 1e-138 | A0A2G9GQW6_9LAMI; Uncharacterized protein | ||||
STRING | XP_009603227.1 | 1e-123 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2923 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 6e-89 | bHLH family protein |