PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011094004.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family LBD
Protein Properties Length: 130aa    MW: 15069.2 Da    PI: 6.1259
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011094004.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601056.2e-33111101100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCaaC+++r++C ++Cvl +yfp e++++f+nv++lFG +n +k+l+++ e+ere++++sl+ eA++r ++Pv+G ++v ++l+ ++e++k+el+
  XP_011094004.1  11 ACAACRYQRKRCDESCVLGRYFPLERAEDFENVQRLFGIQNAVKILNSVAENEREKTVESLILEARMRRENPVHGPIEVEMRLRAEMEKVKKELD 105
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++k+e
  XP_011094004.1 106 MVKKE 110
                     99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.51710111IPR004883Lateral organ boundaries, LOB
PfamPF031957.3E-3211108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MNGEFDMPAG ACAACRYQRK RCDESCVLGR YFPLERAEDF ENVQRLFGIQ NAVKILNSVA  60
ENEREKTVES LILEARMRRE NPVHGPIEVE MRLRAEMEKV KKELDMVKKE LKFFKGDDDH  120
DHHQPGSSTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-2291118111LOB family transfactor Ramosa2.1
5ly0_B3e-2291118111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011094004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094004.18e-93LOB domain-containing protein 27-like
TrEMBLA0A1S4A3K46e-42A0A1S4A3K4_TOBAC; LOB domain-containing protein 22-like
TrEMBLA0A1U7YEQ36e-42A0A1U7YEQ3_NICSY; LOB domain-containing protein 22-like
STRINGXP_009801618.11e-42(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28661752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.15e-26LOB domain-containing protein 27