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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011093944.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 595aa MW: 65982.7 Da PI: 7.3178 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.2 | 2.6e-12 | 426 | 472 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N+ f Lr ++P+ + K++Ka+ L A+ YI +Lq XP_011093944.1 426 NHVEAERQRREKLNQYFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 472 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.4E-53 | 46 | 234 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.66 | 422 | 471 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-18 | 425 | 487 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.20E-13 | 425 | 476 | No hit | No description |
Pfam | PF00010 | 8.4E-10 | 426 | 472 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-18 | 426 | 485 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-16 | 428 | 477 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00246 | 523 | 583 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 595 aa Download sequence Send to blast |
MGGVGWYNED KAMAAAVLGT KAFDYLMSSS VSAECSLMAM GNDENLQNKL SDLVEHPNAS 60 KFCWNYAIFW QLSRSKSGDL VLGWGDGCCR EPREDEESEV TRILKMRLED ESQQRMRKRV 120 LQKLHTLFGG SDEDSYAFGL DRVTDTEMFF LASMYFSFPR GEGGPGRCFG SSKHVWLSDA 180 LKPSVDYCVR SFLAKCAGMQ TIVLIPTDVG VVELGSVRCI PESLELLKVI GSSFSSFSSL 240 IRAKQAAVIT DKNDANGPIR NLVIGNRPEV VPKIFGQDLN SGRMQFKEKV AVSHEEDRTW 300 NASKMPFANS RNGFHGATWS QFANVKPGKA VEIYNPQTSA NKVPELVNGA REEFLLNNFQ 360 HQKPAQMQID FTGATSRPII SHPHNGESEH SDIEASCKEE PAGLLEDKRP RKRGRKPANG 420 REEPLNHVEA ERQRREKLNQ YFYALRAVVP NISKMDKASL LGDAIAYITE LQKKVKDMES 480 ERERLGSVPR EASGSEANPK AEMQDTASSI DVEACRDIVT VRVSCPLRTH PASRVIRAIN 540 DAEATIIEAK MATGSERVFH TFVVKSKGSE GVTKEKLIEA LSHKSNSSQP MSSLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-28 | 420 | 482 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 1e-28 | 420 | 482 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 1e-28 | 420 | 482 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 1e-28 | 420 | 482 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 1e-28 | 420 | 482 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 1e-28 | 420 | 482 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 1e-28 | 420 | 482 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 1e-28 | 420 | 482 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 407 | 415 | KRPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00100 | PBM | Transfer from AT1G01260 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011093944.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093944.1 | 0.0 | transcription factor bHLH13-like | ||||
Swissprot | A0A3Q7ELQ2 | 0.0 | MTB1_SOLLC; Transcription factor MTB1 | ||||
TrEMBL | A0A2Z4K512 | 0.0 | A0A2Z4K512_TECGR; BHLH1 protein | ||||
STRING | XP_009781532.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3585 | 23 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01260.3 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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