PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011093660.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NAC

Protein Properties

Length: 460aa MW: 51022.8 Da PI: 7.0447

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011093660.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	114.9	8.4e-36	49	192	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........t 78 lp+G++F+Ptd+el+ e+L++kvegk+ ++++ +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ XP_011093660.1 49 LPAGVKFDPTDQELI-EHLAAKVEGKQskshplIDEFIpTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqteycdmqG 141 799**********.99*****6665443333333666646******.555666799**************75656555433 PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l XP_011093660.1 142 GETRWHKTGKTRPVMV-NGKHKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 192 3778********.9999******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-38	45	211	IPR003441	NAC domain
PROSITE profile	PS51005	32.758	49	211	IPR003441	NAC domain
Pfam	PF02365	4.0E-16	50	192	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MNKSSSQMGF VSSTSDLIDA KLEEHQLCGS KQCPSCGQKL EGKPDWVGLP AGVKFDPTDQ 60 ELIEHLAAKV EGKQSKSHPL IDEFIPTIEG EDGICYTHPE KLPGVTRDGL SRHFFHRPSK 120 AYTTGTRKRR KIQTEYCDMQ GGETRWHKTG KTRPVMVNGK HKGCKKILVL YTNFGKNRKP 180 EKTNWVMHQY HLGQHEEEKE GELVVSKIFY QTQPRQCNWS DKNSIGANPV EGASDPKGRI 240 ESGSGSCSSK EIIIPQRDDH HHHHHQFSTA VAANAVPHIS SYGTTAIDSF SFLPFGKAFG 300 DQGGNIGEAS VAREAQQGAA GTCEVREMGQ HHVSNIPQHH HRIPAAAFHI SRPSESISTV 360 VSQPVPLHHT GSINILDDDH SFHVPGILLP DENFQQQQQQ QQEQHHKIGG RSASGLEELI 420 MGCTSTAPKQ ESSSITNPHE AEWLKYSTFW ADPDNPDHHG

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MNKSSSQMGF VSSTSDLIDA KLEEHQLCGS KQCPSCGQKL EGKPDWVGLP AGVKFDPTDQ  60
ELIEHLAAKV EGKQSKSHPL IDEFIPTIEG EDGICYTHPE KLPGVTRDGL SRHFFHRPSK  120
AYTTGTRKRR KIQTEYCDMQ GGETRWHKTG KTRPVMVNGK HKGCKKILVL YTNFGKNRKP  180
EKTNWVMHQY HLGQHEEEKE GELVVSKIFY QTQPRQCNWS DKNSIGANPV EGASDPKGRI  240
ESGSGSCSSK EIIIPQRDDH HHHHHQFSTA VAANAVPHIS SYGTTAIDSF SFLPFGKAFG  300
DQGGNIGEAS VAREAQQGAA GTCEVREMGQ HHVSNIPQHH HRIPAAAFHI SRPSESISTV  360
VSQPVPLHHT GSINILDDDH SFHVPGILLP DENFQQQQQQ QQEQHHKIGG RSASGLEELI  420
MGCTSTAPKQ ESSSITNPHE AEWLKYSTFW ADPDNPDHHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-12	47	192	13	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011093660.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093660.1	0.0	NAC domain-containing protein 73-like isoform X3
Swissprot	Q9M0F8	1e-178	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A2G9HLT5	0.0	A0A2G9HLT5_9LAMI; Uncharacterized protein
STRING	Migut.K00558.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-176	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]