PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011093659.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NAC
Protein Properties Length: 462aa    MW: 51264 Da    PI: 7.0447
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011093659.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.98.4e-36491921128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........t 78 
                     lp+G++F+Ptd+el+ e+L++kvegk+      ++++  +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+          
  XP_011093659.1  49 LPAGVKFDPTDQELI-EHLAAKVEGKQskshplIDEFIpTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqteycdmqG 141
                     799************.99*********6665443333333666646**********.555666799******************75656555433 PP

             NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  XP_011093659.1 142 GETRWHKTGKTRPVMV-NGKHKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 192
                     3778************.9999**********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-3845211IPR003441NAC domain
PROSITE profilePS5100532.75849211IPR003441NAC domain
PfamPF023654.1E-1650192IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MNKSSSQMGF VSSTSDLIDA KLEEHQLCGS KQCPSCGQKL EGKPDWVGLP AGVKFDPTDQ  60
ELIEHLAAKV EGKQSKSHPL IDEFIPTIEG EDGICYTHPE KLPGVTRDGL SRHFFHRPSK  120
AYTTGTRKRR KIQTEYCDMQ GGETRWHKTG KTRPVMVNGK HKGCKKILVL YTNFGKNRKP  180
EKTNWVMHQY HLGQHEEEKE GELVVSKIFY QTQPRQCNWS DKNSIGANPV EGASDPKGRI  240
ESGSGSCSSK EIIIPQRDDH HHHHHQFSTA VAANAVPHIS SYGTTAIDSF SFLPFGKAFG  300
DQLQGGNIGE ASVAREAQQG AAGTCEVREM GQHHVSNIPQ HHHRIPAAAF HISRPSESIS  360
TVVSQPVPLH HTGSINILDD DHSFHVPGIL LPDENFQQQQ QQQQEQHHKI GGRSASGLEE  420
LIMGCTSTAP KQESSSITNP HEAEWLKYST FWADPDNPDH HG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-124719213140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011093659.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093659.10.0NAC domain-containing protein 73-like isoform X1
SwissprotQ9M0F81e-178NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A2G9HLT50.0A0A2G9HLT5_9LAMI; Uncharacterized protein
STRINGMigut.K00558.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40572444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-175NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]