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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
XP_011093516.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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| Family |
C3H |
| Protein Properties |
Length: 354aa MW: 39394.6 Da PI: 7.9278 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_011093516.1 | genome | NCBI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 26.3 | 1.3e-08 | 34 | 53 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25
+C f+++ G C yG+rC++ H
XP_011093516.1 34 ICTFYQK-GVCAYGSRCRYDH 53
7******.************* PP
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| 2 | zf-CCCH | 23.7 | 8.3e-08 | 135 | 157 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
+++C+ fa+ G+C++G +C+ +Hg
XP_011093516.1 135 RPICS-FAAAGECPRGVNCPQIHG 157
79999.*****************9 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 13.3 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.012 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.53E-6 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.117 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0024 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.75E-5 | 32 | 53 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 7.2E-6 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.0E-4 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.361 | 132 | 159 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0011 | 133 | 158 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.0E-5 | 135 | 157 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF57850 | 6.1E-14 | 190 | 265 | No hit | No description |
| Gene3D | G3DSA:3.30.40.10 | 5.7E-11 | 197 | 260 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| CDD | cd00162 | 0.0012 | 200 | 260 | No hit | No description |
| PROSITE profile | PS50089 | 12.666 | 201 | 259 | IPR001841 | Zinc finger, RING-type |
| SMART | SM00184 | 1.3E-8 | 201 | 258 | IPR001841 | Zinc finger, RING-type |
| Pfam | PF00097 | 3.1E-7 | 201 | 258 | IPR018957 | Zinc finger, C3HC4 RING-type |
| PROSITE pattern | PS00518 | 0 | 225 | 234 | IPR017907 | Zinc finger, RING-type, conserved site |
| PROSITE profile | PS50103 | 13.854 | 288 | 317 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.39 | 288 | 316 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 354 aa
Download sequence Send
to blast |
MSKRILCKFF AHGACLKGEC CEYSHDWKAP PNNICTFYQK GVCAYGSRCR YDHIKVSRSQ 60
PPASSSSADL AFAKVLPSAT ATFGVGIATC SVSSASSGPL DPPNRPAWGE NSMRHDIIHN 120
DDDFADVGNF DPADRPICSF AAAGECPRGV NCPQIHGDLC PTCRKHCLHP FRPHEREEHL 180
KTCDKRQKHL EALKGSQEIE CSVCLERVLS KPTAAERKFG ILSECNHPFC VSCIRNWRSS 240
SPASSSDANS ALRTCPICRK LSYFVIPSVI WYSSEEEKQE IVDSYKAKLR SIDCKHFNFG 300
NGTCPFGTSC FYKHAYRDGR LEEVVIRHLG SEDGNTVIAK DIRLSDFLTN LQIR
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