PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011093424.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 493aa MW: 55142.2 Da PI: 5.8023 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.4 | 5.4e-13 | 293 | 339 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er RR +N++++ Lr+l+P++ +K++ a+i+ A++YI++L XP_011093424.1 293 TKHFATERHRRVLLNDKYQALRKLVPNP-----TKNDRASIVGDAIDYINEL 339 78**************************.....9***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.342 | 290 | 339 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-14 | 291 | 355 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.9E-13 | 293 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-10 | 293 | 339 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.48E-10 | 293 | 343 | No hit | No description |
SMART | SM00353 | 9.1E-10 | 296 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MYEESAGFDQ NSLHEGGGLV QAEDGFSQTH IPNCNNNNQS FSMEEQSNYP QNQMSQQDVA 60 FSALEMELQH HLNLEMEQCY NNTSSGNHEI QEIVHDSNWQ EMTNFNGENQ YHHQHQPPAD 120 YVQNGHHHHH QQNFTTGSLP ETPYPTTPDL LNMFPLPRCS PSSLLPNSSI TFSNSAHKSP 180 GFLASLGLLG EINTSADGSS ASAGAVVYDP LLPLNLPPQP PLLRELFHSL PHGGYTLGAP 240 RNGTLFGGVD ERDVNVGLYQ NGDHGRSFDH NGVFEFTAGE IDCIGKNRDG KDTKHFATER 300 HRRVLLNDKY QALRKLVPNP TKNDRASIVG DAIDYINELK RTVTELKGWV EKKRCIKERL 360 KRPKTEDDAV MEGNESKSVG EMDNPYNSSS LRSSWLHRKS KNTEVDVRII DDEVTVKLVQ 420 QKRINCLLFV SKVLDELQLD LHHVAGGLIG DYYSFLFNSK ICEGSIVYAS AVANKLIEVV 480 DKQYAAIPPT SSY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011093424.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ030132 | 5e-58 | KJ030132.1 Sesamum indicum clone TilSSR_1333 microsatellite sesame_1333 sequence. | |||
GenBank | KJ042031 | 5e-58 | KJ042031.1 Sesamum indicum clone TilSSR_13232 microsatellite Sesame_13232 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093423.1 | 0.0 | transcription factor bHLH91-like | ||||
TrEMBL | A0A2G9GJM2 | 0.0 | A0A2G9GJM2_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N01685.1.p | 1e-169 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31210.1 | 1e-75 | bHLH family protein |