PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011093390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 373aa MW: 41055.5 Da PI: 6.0947 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.2 | 1.4e-18 | 208 | 262 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++p+ +++ LAk+l+L rqV vWFqNrRa+ k XP_011093390.1 208 RKKLRLTKEQSAFLEESFKEHNTPNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 262 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 124.1 | 6.5e-40 | 208 | 298 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rl+keq+++LEesF+e+++ +p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk XP_011093390.1 208 RKKLRLTKEQSAFLEESFKEHNTPNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELR-ALK 298 69*************************************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.99E-19 | 198 | 265 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.831 | 204 | 264 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-16 | 206 | 268 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.8E-16 | 208 | 262 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-18 | 208 | 262 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.01E-16 | 208 | 265 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 239 | 262 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 1.0E-25 | 264 | 307 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 5.8E-11 | 264 | 298 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MELGLSLGDA TKPFGFLKEN NTQKQQNAAI SKKSGLDFCI ALGLSSSTVG DGDREKTQRS 60 QEDDDEDDDD DDDQSSEGDG SDDTQGETHL QLNLRPLAPV HRRVSPRLLS LPWSSDNGSS 120 ENGSSGNMGL PAAKGFDVNR LPAAAEEVSS ANSVGSPFQR DFGMYRRPGN GNLGGSKRDF 180 EATGNDVVEA ERASSRASDD DENGLNTRKK LRLTKEQSAF LEESFKEHNT PNPKQKLALA 240 KQLNLRPRQV EVWFQNRRAR TKLKQTEVDC EYLKRCCETL TEENRRLHKE LQELRALKTS 300 NPFYMQSPAT TLTMCPSCER VATTTTTTTA PPPVSAASGK MAPIPKAIPF PLTRPRFFPF 360 PQTPTHPNQP AAS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 206 | 212 | TRKKLRL |
2 | 256 | 264 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011093390.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ072950 | 7e-60 | KJ072950.1 Sesamum indicum clone TilSSR_44151 microsatellite Sesame_44151 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093390.1 | 0.0 | homeobox-leucine zipper protein HOX11-like | ||||
Swissprot | P46665 | 1e-85 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A2G9I609 | 0.0 | A0A2G9I609_9LAMI; Transcription factor HEX | ||||
STRING | XP_009617361.1 | 1e-145 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-68 | homeobox from Arabidopsis thaliana |