PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011093324.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | NF-YA | ||||||||
Protein Properties | Length: 310aa MW: 34086.6 Da PI: 9.9647 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 99.3 | 3.9e-31 | 143 | 199 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Ra++e +kkl k+rkpylheSRh+hA+rR+RgsgGrF XP_011093324.1 143 EEPVYVNAKQYRGILRRRQMRARAELDKKL-VKNRKPYLHESRHQHAIRRARGSGGRF 199 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 8.9E-36 | 141 | 202 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.332 | 142 | 202 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.5E-26 | 144 | 199 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.0E-22 | 145 | 167 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.0E-22 | 176 | 199 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MPALAKSSDQ QLETGLRSIP NSTFYSQPWW QGLGHNGMPS GGQQEDGPVG PATLQPQGTG 60 EGASKDPEIN AALRSGLNGS NNGQEKQHLD ANSQMELVGH SIMLTPYPYE DPQYGGRLTY 120 GATVHHLLGY HPARMPLPLE MEEEPVYVNA KQYRGILRRR QMRARAELDK KLVKNRKPYL 180 HESRHQHAIR RARGSGGRFL NTKKLDGSGK NSTSGEQPKS GEITHTQSSS PASAHLSYNR 240 NNISNQQGNG ASTIQGTHKK QNLPNGFSHG NGLALYYADS TRRDLENDHF SEDNRTSLVS 300 TAPQGPSFRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-18 | 143 | 206 | 2 | 65 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011093324.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093323.1 | 0.0 | nuclear transcription factor Y subunit A-1-like | ||||
Refseq | XP_011093324.1 | 0.0 | nuclear transcription factor Y subunit A-1-like | ||||
TrEMBL | A0A2G9IBN7 | 1e-138 | A0A2G9IBN7_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N01603.1.p | 4e-81 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.4 | 1e-37 | nuclear factor Y, subunit A1 |