![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011093300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 678aa MW: 75941.6 Da PI: 4.6606 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.6 | 1.8e-10 | 529 | 570 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++++ el+++av+q+G++ + I + ++ Rt+ q+k+++ k XP_011093300.1 529 RWSKQDTELFYEAVRQFGTD-LSMIQQLFP-DRTRRQVKLKYKK 570 8*******************.*********.***********87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15963 | 1.5E-27 | 522 | 603 | No hit | No description |
PROSITE profile | PS51293 | 9.091 | 525 | 573 | IPR017884 | SANT domain |
SMART | SM00717 | 2.7E-7 | 526 | 574 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.81E-7 | 529 | 570 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-5 | 529 | 570 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.66E-10 | 529 | 576 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 678 aa Download sequence Send to blast |
MGIDLDPLDD IFADEAVKNA RAVGKFQPKS KFRPPRKDAA ATSLSSSQAA QTIDPAQSES 60 SDPRRRAESS EKVISGLDVV SNYDGGWHAS IEKSVTENAD IFIGLEALGD FLPHTTTDMG 120 GGPAPVISSV GDSTHRCKVA DVPKCHELSA AVDPVTAGKP IVSSSDGCGR MHDKELGREE 180 MDIMDSINAS EFTTNSGHRT GKFQPKPKLQ MHEVKPAESL SCSLGSQSVP PEISYAEKDF 240 SPTFQQDDVL DLSSLGFTHT LPTEASSELP LNEESMNLTE MTQLDSGIPL ECPPEIPAKL 300 ASRRAKIGRN KTQTALDPSQ QQQKTSTSCQ ENEMGRSLRP RKSKTNFCEL GDEVEDVVRA 360 SEEFSEECPV NSAAEEETVN NEEFQVESDS QMKKVKQKFE KPVRKRKETE ASDKDAKPKK 420 FSHSTRRRRV DKVLLATPED EIEYQKVPLR DLILLAEHKE REMKKEEAGA GVTANKQSNG 480 NSSSRYNQEE TFTSEQNGEY NDGQGSPRIE ESPIYFNYHT HMDRTPSIRW SKQDTELFYE 540 AVRQFGTDLS MIQQLFPDRT RRQVKLKYKK EERQHPLRLR EALTNRTKDH SHFEKVIERL 600 KQIAAEENQN ADNDESIDLT GNEVDEGTLN AGDEEAKDEH IDEEVNENVE NDFTEVQSPS 660 KSEDIEDDLF IWSQYKSG |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 400 | 406 | KPVRKRK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011093300.1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093303.1 | 0.0 | transcription factor TFIIIB component B''-like isoform X1 | ||||
TrEMBL | A0A2G9GU17 | 0.0 | A0A2G9GU17_9LAMI; Uncharacterized protein | ||||
STRING | Migut.F00900.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5902 | 23 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39160.1 | 2e-46 | MYB_related family protein |