PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011093295.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 468aa MW: 50037.5 Da PI: 7.8569

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011093295.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.8	1.3e-15	300	345	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++++P++ K +Ka++L +++eY+k+Lq XP_011093295.1 300 HNQSERKRRDKINQRMKTLQKMVPNS-----SKTDKASMLDEVIEYLKQLQ 345 9**********************8.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.54E-19	293	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.606	295	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.42E-17	300	349	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.5E-18	300	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-13	300	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-18	301	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0009506	Cellular Component	plasmodesma
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MNQCVPSWDL DQHAPPRLVH RARSNSSNSL PAEVVPSLDY EVAELTWENG QLAMHGLGPP 60 RVVNKPTLAS SPTKYSNWDR PRAGGTLESI VNQATGHLRP KSAVDGGGGD NAKELVPWFD 120 PHRAAIVNPA TASASITVTM DALVPCNNNS ICRNDNNQEN SAHVLEGIGT CVVGCSTRVG 180 SCSAAAVATD GGDRVARVGV CSCKANASAS ESATCGGRDS RQLTLDTCER ELGGGGFTST 240 SLWSPENTSS GKEYTKTSAD DHDSVCHSRS QRDAFDEEGK KKGSGKSSVS TKRSRAAAIH 300 NQSERKRRDK INQRMKTLQK MVPNSSKTDK ASMLDEVIEY LKQLQAQVQM MSRMNMPSMM 360 LPLAMQQQQQ LHMSMMSMAG LGVMDLNTIG RAAAMPPVPA AAAVIPPPAA FMPMASWDIQ 420 GDRLPSPAVV PDFLSAALLA CQSQPMTIDG YSRLAALFQQ FQQPPTSG

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MNQCVPSWDL DQHAPPRLVH RARSNSSNSL PAEVVPSLDY EVAELTWENG QLAMHGLGPP  60
RVVNKPTLAS SPTKYSNWDR PRAGGTLESI VNQATGHLRP KSAVDGGGGD NAKELVPWFD  120
PHRAAIVNPA TASASITVTM DALVPCNNNS ICRNDNNQEN SAHVLEGIGT CVVGCSTRVG  180
SCSAAAVATD GGDRVARVGV CSCKANASAS ESATCGGRDS RQLTLDTCER ELGGGGFTST  240
SLWSPENTSS GKEYTKTSAD DHDSVCHSRS QRDAFDEEGK KKGSGKSSVS TKRSRAAAIH  300
NQSERKRRDK INQRMKTLQK MVPNSSKTDK ASMLDEVIEY LKQLQAQVQM MSRMNMPSMM  360
LPLAMQQQQQ LHMSMMSMAG LGVMDLNTIG RAAAMPPVPA AAAVIPPPAA FMPMASWDIQ  420
GDRLPSPAVV PDFLSAALLA CQSQPMTIDG YSRLAALFQQ FQQPPTSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	303	308	ERKRRD
2	304	309	RKRRDK

Functional Description ? help Back to Top
Source	Description
UniProt	Required during the fertilization of ovules by pollen. {ECO:0000269\|PubMed:15634699}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00034	PBM	Transfer from AT4G00050	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011093295.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093295.1	0.0	LOW QUALITY PROTEIN: transcription factor UNE10
Swissprot	Q8GZ38	1e-101	UNE10_ARATH; Transcription factor UNE10
TrEMBL	A0A2G9GTZ3	0.0	A0A2G9GTZ3_9LAMI; Transcriptional repressors of the hairy/E(Spl) family (Contains HLH)
STRING	cassava4.1_007418m	1e-159	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4367	21	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	7e-73	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]