PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011093277.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 288aa MW: 32015.9 Da PI: 8.1361 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.9 | 8.3e-19 | 141 | 194 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++ +eq +Lee F+++++++ +++ LA++l+Lt rqV vWFqNrRa+ k XP_011093277.1 141 KKLRLCREQAAVLEESFREHNTLNPKQKMALAMQLNLTSRQVEVWFQNRRARTK 194 56667789********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 119.2 | 2.2e-38 | 140 | 229 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl +eq+++LEesF+e+++L+p++K++la +L+l+ rqv+vWFqnrRARtk kq+E+d+e+L+r +++l+een+rL+kev+eLr +l XP_011093277.1 140 RKKLRLCREQAAVLEESFREHNTLNPKQKMALAMQLNLTSRQVEVWFQNRRARTKFKQTEVDCEYLRRYCENLTEENRRLQKEVNELR-AL 229 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 9.3E-27 | 1 | 116 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 1.7E-17 | 115 | 196 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.665 | 136 | 196 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.11E-17 | 139 | 205 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.6E-12 | 140 | 200 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.05E-13 | 140 | 194 | No hit | No description |
Pfam | PF00046 | 3.7E-16 | 141 | 194 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 171 | 194 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 4.8E-10 | 196 | 230 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 2.0E-23 | 196 | 239 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 288 aa Download sequence Send to blast |
MVEKDDGLGL SLSLKCLQNQ NSNPPPSPSP LPTAASPFPL NLFGCPLPNF MKQRKSSSTD 60 AYHESTADRN SEMRSLFRGI DVNLAITAAD VCDEELMVSS PNSTVSSVSG KRSEREENDG 120 ERDSSSLEIN DSDGGDAAGR KKLRLCREQA AVLEESFREH NTLNPKQKMA LAMQLNLTSR 180 QVEVWFQNRR ARTKFKQTEV DCEYLRRYCE NLTEENRRLQ KEVNELRALK LSPQFYTNTS 240 PPTTLTMCPQ CKRVAVPSSS SSTNTTSTPT ATTSGRISRL PTTGRCPL |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 188 | 196 | RRARTKFKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011093277.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093277.2 | 0.0 | homeobox-leucine zipper protein HAT4 | ||||
Swissprot | P46602 | 3e-83 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
TrEMBL | A0A2G9HT48 | 1e-125 | A0A2G9HT48_9LAMI; Transcription factor HEX | ||||
STRING | Migut.B01552.1.p | 1e-112 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1118 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G16780.1 | 2e-77 | homeobox protein 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|