PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011092847.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family DBB
Protein Properties Length: 199aa    MW: 22509.3 Da    PI: 5.646
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011092847.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.98.7e-08433534
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                     C+ +e+  ++lfC  ++  lC+ C ++ H
  XP_011092847.1  4 LCDVCESAAATLFCAADEAALCRACDDKVH 33
                    7**************************998 PP
2zf-B_box27.65.8e-095292238
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                    e ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H+
  XP_011092847.1 52 EVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtHR 92
                    789***************************99966666776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.21147IPR000315B-box-type zinc finger
SMARTSM003367.0E-8147IPR000315B-box-type zinc finger
CDDcd000211.23E-6334No hitNo description
PfamPF006431.8E-6342IPR000315B-box-type zinc finger
PROSITE profilePS501199.2295196IPR000315B-box-type zinc finger
SMARTSM003361.0E-115196IPR000315B-box-type zinc finger
PfamPF006431.1E-65292IPR000315B-box-type zinc finger
CDDcd000212.13E-75493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MRTLCDVCES AAATLFCAAD EAALCRACDD KVHTCNKLAS RHIRVGLAEL SEVPRCDICE  60
NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HRRYLLLRQR VEFPGNDKPG SREELGSQKG  120
RLREKENLQN HRFSPNSFIG NSSESDEKME DFLIDLNARP PGLYDRAANN QEQVDTLVDI  180
NHASQTMVPN RYFREEPEK
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011092847.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092847.11e-147B-box zinc finger protein 19 isoform X3
SwissprotC0SVM54e-75BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A2G9G0M39e-93A0A2G9G0M3_9LAMI; Uncharacterized protein
STRINGMigut.B00176.1.p2e-95(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31752340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-77DBB family protein