PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011092834.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family SRS
Protein Properties Length: 214aa    MW: 23834.5 Da    PI: 8.286
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011092834.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702166.11.9e-51151574155
          DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 
                      + +CqdCGnqak++C+h RCRtCCk+rgf+C+thvkstWvp+ +r+  ++ ++    ++     +++ ++++     + s+ ++ + ++a +  
  XP_011092834.1  15 SSRRCQDCGNQAKRECQHLRCRTCCKNRGFECQTHVKSTWVPVCRRQPTHHIMHHH--HQ----ISSTLHQHQ---LLHGSNPKRHRQNQA-AFL 99 
                     5679****************************************998753332222..11....111222222...223333333332233.223 PP

          DUF702  99 ele.tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGleek 155
                      ++   +lP e+s +avfrcvrvss d+  +++aYqt+vsigGhvf GiLydqG+e++
  XP_011092834.1 100 GFQiEGTLPGEMSFPAVFRCVRVSSADNMVDQYAYQTSVSIGGHVFTGILYDQGPEDQ 157
                     3330335************************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.6E-5316155IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.7E-241960IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.3E-23107154IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MMRGGEILNS SSSSSSRRCQ DCGNQAKREC QHLRCRTCCK NRGFECQTHV KSTWVPVCRR  60
QPTHHIMHHH HQISSTLHQH QLLHGSNPKR HRQNQAAFLG FQIEGTLPGE MSFPAVFRCV  120
RVSSADNMVD QYAYQTSVSI GGHVFTGILY DQGPEDQLEE SGNYVTGESS SDGLLQQHPN  180
FVNRATTGTV SSSYPTSFCA VTAATSQFSQ YPKS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011092834.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092834.11e-160protein SHI RELATED SEQUENCE 3-like
SwissprotQ9XGX04e-45SHI_ARATH; Protein SHORT INTERNODES
TrEMBLA0A4D8ZI002e-82A0A4D8ZI00_SALSN; Uncharacterized protein
TrEMBLA0A4D9C4F92e-82A0A4D9C4F9_SALSN; Uncharacterized protein
STRINGSolyc01g110140.2.14e-66(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41562445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.12e-46Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Islam MA, et al.
    Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants.
    PLoS ONE, 2013. 8(1): p. e53377
    [PMID:23308204]
  2. Pfannebecker KC,Lange M,Rupp O,Becker A
    An Evolutionary Framework for Carpel Developmental Control Genes.
    Mol. Biol. Evol., 2017. 34(2): p. 330-348
    [PMID:28049761]
  3. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]