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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011092692.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 303aa MW: 35022 Da PI: 6.8717 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42.2 | 1e-13 | 10 | 52 | 2 | 44 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i+n++ r+ tf kR++g+ K E +LCd+++++ii++++ XP_011092692.1 10 LISNERSRTLTFKKRKEGLTRKLREFTTLCDVNACMIIYGPKP 52 59**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.6E-13 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.156 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.02E-18 | 1 | 71 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.55E-21 | 2 | 78 | No hit | No description |
PRINTS | PR00404 | 2.8E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-14 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-8 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MGRAKLKMEL ISNERSRTLT FKKRKEGLTR KLREFTTLCD VNACMIIYGP KPEIGPEIWP 60 QNNPDEVRRM IQVYSARNRD SGSKSFGLPD FFNDRKRKLE EEFVKLRRKN LEAKYPTWFE 120 FLNDLSEAQL RDFAVGLKNK AGSVKSRIEF LKCSRNDNPG LEFDQLMMDA ARLNQFYNLN 180 QQQQISSVDH HHDHHVQCAN QDPLMMMLMM NENNDQLIGA AAGSFDHQDN VFYGMEPTGP 240 VGPVICYGPT PVEQYYTPPP MALPLSLPPP PYIPVMSRLQ FSTMENYYHD GAALEDIFQD 300 MIR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 109 | KLRRKN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011092692.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011092692.1 | 0.0 | agamous-like MADS-box protein AGL82 | ||||
TrEMBL | A0A2G9HM50 | 7e-83 | A0A2G9HM50_9LAMI; MADS box transcription factor | ||||
STRING | Migut.B00770.1.p | 7e-62 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2457 | 22 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 1e-22 | M-type_MADS family protein |