PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011092504.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 208aa    MW: 23151.1 Da    PI: 8.4556
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011092504.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.19.8e-111311711055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  XP_011092504.1 131 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 171
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.29E-15121187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.224121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-13126182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.97E-10130175No hitNo description
PfamPF000104.5E-8131171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MESDEKLPED VLQGKNFQPL KEDKTSSPPE ISKKRPGIPG GFQRSKRSMK LKKCVKVDDE  60
NDEDNNNNNT SLMLHRQSSS SCCSEDESNA SQELNGVASS SSSQVSGALN LSGKTRASRG  120
SATDPQSLYA RKRRERINER LRILQNLVPN GTKVDISTML EEAVQYVKFL QLQIKLLSSD  180
DMWMYAPIAY NGMDIGLDLK IPTPKSQP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011092504.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0317892e-58KJ031789.1 Sesamum indicum clone TilSSR_2990 microsatellite sesame_2990 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552815.11e-151transcription factor bHLH84
RefseqXP_020552816.11e-151transcription factor bHLH84
RefseqXP_020552817.11e-151transcription factor bHLH84
SwissprotQ7XHI96e-64BH084_ARATH; Transcription factor bHLH84
TrEMBLA0A2Z7D0M61e-85A0A2Z7D0M6_9LAMI; Basic helix-loop-helix family protein
STRINGPOPTR_0001s30150.13e-79(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.13e-45bHLH family protein