PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011092499.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 365aa    MW: 40346.5 Da    PI: 4.6844
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011092499.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.3e-102883281055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  XP_011092499.1 288 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 328
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-14278344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.224278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-12283339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.69E-11287332No hitNo description
PfamPF000101.2E-7288328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
METVGTISEG EWNSSFNGMS SEEADFMAQL LGNCSLPSEV PNGAASNFAV SSTFWPARES  60
NLNMTSVSEN AAMYSSDETN ITNMYSFAQG SSYSGGSSVI FPSSSHESYY PSGSHQFFLT  120
NNNIMTMDYF NNSSRVPFTD NVMERNHFLN QDVSNDSMES DEKLPEDVLQ GKNFQPLKED  180
KTSSPPEISK KRPGIPGGFQ RSKRSMKLKK CVKVDDENDE DNNNNNTSLM LHRQSSSSCC  240
SEDESNASQE LNGVASSSSS QVSGALNLSG KTRASRGSAT DPQSLYARKR RERINERLRI  300
LQNLVPNGTK VDISTMLEEA VQYVKFLQLQ IKLLSSDDMW MYAPIAYNGM DIGLDLKIPT  360
PKSQP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011092499.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0317894e-58KJ031789.1 Sesamum indicum clone TilSSR_2990 microsatellite sesame_2990 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552815.10.0transcription factor bHLH84
RefseqXP_020552816.10.0transcription factor bHLH84
RefseqXP_020552817.10.0transcription factor bHLH84
TrEMBLA0A022RB651e-138A0A022RB65_ERYGU; Uncharacterized protein
STRINGMigut.B00443.1.p1e-127(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.16e-44bHLH family protein