PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011092458.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GATA
Protein Properties Length: 322aa    MW: 35786.1 Da    PI: 5.9489
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011092458.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.62.7e-16183219135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  XP_011092458.1 183 CQHCGVSEtsTPAMRRGPAGPRTLCNACGLMWANKGT 219
                     ******9999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009795.2E-94479IPR010399Tify domain
PROSITE profilePS5132013.2284479IPR010399Tify domain
PfamPF062005.4E-114878IPR010399Tify domain
PROSITE profilePS5101712.828112154IPR010402CCT domain
PfamPF062031.5E-15112154IPR010402CCT domain
SMARTSM004016.0E-11177230IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-12178230No hitNo description
PROSITE profilePS501148.787181234IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.2E-15181224IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.86E-16182226No hitNo description
PfamPF003202.7E-14183219IPR000679Zinc finger, GATA-type
PROSITE patternPS003440183210IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MRTAEVSTPM ISAAAGGDDT TSSAEEMSAP MPITVNNQLS VRLPVSRTSE LTISFEGEVY  60
VFPAVTPEKV QAVLLLLGDQ ETPNSITSPE FLLQLNDKAV DDVSSRPTDS RRIASLERFR  120
EKRKERCFEK KIRYTCRKEV AQRMHRKNGQ FASVKDLCKA SADNWVSGNI TPHPEPLSVL  180
RRCQHCGVSE TSTPAMRRGP AGPRTLCNAC GLMWANKGTL RDLSKGGRHI LDHNEAETLE  240
IKPPAAEPDN LYHNHDEERT PEQRPPLVES GNPSVRTQQE TLEELTNASG SEFEIPANFG  300
EQVCTFRNSE QLLDNSRPSY PI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011092458.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092459.10.0GATA transcription factor 19-like isoform X1
SwissprotQ8GXL73e-59GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A068TMB91e-122A0A068TMB9_COFCA; Uncharacterized protein
STRINGMigut.N01100.1.p1e-129(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56022035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-54ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]