PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011092242.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NAC

Protein Properties

Length: 373aa MW: 42500.3 Da PI: 7.1269

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011092242.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.4	6.9e-50	31	156	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++ XP_011092242.1 31 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPGLAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSEN 124 79*************************.89***********8777899************************************* PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 + +glkktLvfy+g+apkg +t+W+m+eyrl XP_011092242.1 125 FRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 156 ****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.09E-55	29	176	IPR003441	NAC domain
PROSITE profile	PS51005	55.804	30	177	IPR003441	NAC domain
Pfam	PF02365	4.4E-25	32	156	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MAIASAMNNI NQDDVTSNKQ DDDDHDYDVV MPGFRFHPTE EELVEFYLRR KVEGKRFNVE 60 LITFLDLYRY DPWELPGLAA IGEKEWYFYV PRDRKYRNGD RPNRVTTSGY WKATGADRMI 120 RSENFRSIGL KKTLVFYSGK APKGIRTSWI MNEYRLPLHE TERLQKAEIS LCRVYKRAGV 180 EDHPSLPRSL PATRPPSSST RNHHEPAPTT QRFQPNYVGS SQQNDTKLTE TSPSSSTDNM 240 NSYTLLPNIP STTPSVVENN QTMILLQSKQ PNSCPSSFTS SSHAVDDLQK LVNFQRQSLL 300 INSESADPHH DHYNPNNNIV PNLLSNFSTL QPHQPQSAAV NVVPGSFQAA FSDRLWDWNA 360 VPEAGKDYAG LFK

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MAIASAMNNI NQDDVTSNKQ DDDDHDYDVV MPGFRFHPTE EELVEFYLRR KVEGKRFNVE  60
LITFLDLYRY DPWELPGLAA IGEKEWYFYV PRDRKYRNGD RPNRVTTSGY WKATGADRMI  120
RSENFRSIGL KKTLVFYSGK APKGIRTSWI MNEYRLPLHE TERLQKAEIS LCRVYKRAGV  180
EDHPSLPRSL PATRPPSSST RNHHEPAPTT QRFQPNYVGS SQQNDTKLTE TSPSSSTDNM  240
NSYTLLPNIP STTPSVVENN QTMILLQSKQ PNSCPSSFTS SSHAVDDLQK LVNFQRQSLL  300
INSESADPHH DHYNPNNNIV PNLLSNFSTL QPHQPQSAAV NVVPGSFQAA FSDRLWDWNA  360
VPEAGKDYAG LFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-55	32	177	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-55	32	177	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-55	32	177	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-55	32	177	19	165	NO APICAL MERISTEM PROTEIN
3swm_A	9e-55	32	177	22	168	NAC domain-containing protein 19
3swm_B	9e-55	32	177	22	168	NAC domain-containing protein 19
3swm_C	9e-55	32	177	22	168	NAC domain-containing protein 19
3swm_D	9e-55	32	177	22	168	NAC domain-containing protein 19
3swp_A	9e-55	32	177	22	168	NAC domain-containing protein 19
3swp_B	9e-55	32	177	22	168	NAC domain-containing protein 19
3swp_C	9e-55	32	177	22	168	NAC domain-containing protein 19
3swp_D	9e-55	32	177	22	168	NAC domain-containing protein 19
4dul_A	7e-55	32	177	19	165	NAC domain-containing protein 19
4dul_B	7e-55	32	177	19	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011092242.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092242.1	0.0	NAC domain-containing protein 35
Swissprot	Q9ZVP8	1e-110	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A2G9GEF3	1e-169	A0A2G9GEF3_9LAMI; Uncharacterized protein
STRING	cassava4.1_009166m	1e-145	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3888	24	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	1e-112	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]