PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

GATA

Protein Properties

Length: 352aa MW: 38808.2 Da PI: 6.7555

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011092007.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	55.2	9.9e-18	238	272	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l XP_011092007.1 238 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 272 99*****************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	3.5E-78	11	329	IPR016679	Transcription factor, GATA, plant
SMART	SM00401	7.9E-18	232	282	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	12.374	232	268	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.0E-14	233	269	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	1.19E-15	233	296	No hit	No description
CDD	cd00202	8.59E-15	237	284	No hit	No description
PROSITE pattern	PS00344	0	238	263	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	1.3E-15	238	272	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0009416	Biological Process	response to light stimulus
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
METTNADYFY SAQSTAEKRP SDGKNGDHFI IEDLLDFPTD DNLVSAVDTG LMAVSSTDSS 60 TVTAVDTSCN SSFSAVSTAE PHFHPADIGG PRCSVGANFS SELCVPYDDL AELEWLSNFV 120 DESFSSEDLQ KLQLIQGMKA RTDEASADYQ YQFQPETTHP GPLLPPETPV PAKARSKRSR 180 TAPGNWTSRL LVVSPTPPAM SSSSESDVTA VKKAAKPGVQ KKREGPETAS PGGEGRKCLH 240 CATDKTPQWR TGPMGPKTLC NACGVRYKSG RLVPEYRPAA SPTFVLTKHS NSHRKVLELR 300 RQKEMLRAQQ QQQQQFLHHH HHHHHQAVMF DVSNGDDYLI HQHIGPDFRQ LI

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

METTNADYFY SAQSTAEKRP SDGKNGDHFI IEDLLDFPTD DNLVSAVDTG LMAVSSTDSS  60
TVTAVDTSCN SSFSAVSTAE PHFHPADIGG PRCSVGANFS SELCVPYDDL AELEWLSNFV  120
DESFSSEDLQ KLQLIQGMKA RTDEASADYQ YQFQPETTHP GPLLPPETPV PAKARSKRSR  180
TAPGNWTSRL LVVSPTPPAM SSSSESDVTA VKKAAKPGVQ KKREGPETAS PGGEGRKCLH  240
CATDKTPQWR TGPMGPKTLC NACGVRYKSG RLVPEYRPAA SPTFVLTKHS NSHRKVLELR  300
RQKEMLRAQQ QQQQQFLHHH HHHHHQAVMF DVSNGDDYLI HQHIGPDFRQ LI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250\|UniProtKB:Q8LAU9, ECO:0000269\|PubMed:25265867}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00530	DAP	Transfer from AT5G25830	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011092007.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ032375	1e-73	KJ032375.1 Sesamum indicum clone TilSSR_3576 microsatellite sesame_3576 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092007.1	0.0	GATA transcription factor 12
Swissprot	P69781	7e-89	GAT12_ARATH; GATA transcription factor 12
TrEMBL	A0A2Z7BRK2	1e-152	A0A2Z7BRK2_9LAMI; GATA transcription factor
STRING	XP_010267189.1	1e-146	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1919	23	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25830.1	7e-86	GATA transcription factor 12

Publications ? help Back to Top
Ravindran P,Verma V,Stamm P,Kumar PP A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor. Mol Plant, 2017. 10(10): p. 1307-1320 [PMID:28917589]