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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011091561.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 148aa MW: 16367.8 Da PI: 9.1206 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.9 | 2.3e-05 | 38 | 72 | 15 | 54 |
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ ++++ L++l+ + +K + a++L +A+eYI+ L XP_011091561.1 38 KVSERISALQQLVSPY-----GKTDTASVLLEAMEYINFL 72 78899********999.....9***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-8 | 23 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.045 | 23 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.79E-11 | 30 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.00E-6 | 31 | 77 | No hit | No description |
SMART | SM00353 | 0.0055 | 31 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MMQHKRSPIS IDQSSFMSLM PKRLKTDVTL SSKEKKEKVS ERISALQQLV SPYGKTDTAS 60 VLLEAMEYIN FLHEQVKVLS APYLYNTPVQ AQGEEPCSLK SKGLCLVPIS FTVGVVSSNG 120 ADIWAPIKTS HLNSRRSISD EVSVVTHS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011091561.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011091560.1 | 1e-105 | transcription factor bHLH113 isoform X1 | ||||
Refseq | XP_011091561.1 | 1e-106 | transcription factor bHLH113 isoform X2 | ||||
Refseq | XP_011091562.1 | 1e-106 | transcription factor bHLH113 isoform X2 | ||||
Swissprot | Q7XJU2 | 7e-53 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | A0A2G9GDK7 | 6e-84 | A0A2G9GDK7_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N03067.1.p | 2e-77 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 1e-47 | bHLH family protein |
Publications ? help Back to Top | |||
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