PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011090856.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | LBD | ||||||||
Protein Properties | Length: 201aa MW: 22044.1 Da PI: 7.9419 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.9 | 4.1e-39 | 9 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++apyf ++q +++fa+vh++FGasn +kll ++p+++r da+ +l+yeA ar+rdPvyG+v++i++lqqq+ +l+ael XP_011090856.1 9 PCGACKFLRRKCVRGCIFAPYFDSDQgTAHFAAVHRVFGASNASKLLLRIPPHRRLDAVITLCYEALARVRDPVYGCVAHIFTLQQQVVNLQAEL 103 7***********************9989******************************************************************* PP DUF260 95 allkee 100 a+++++ XP_011090856.1 104 AYIQAR 109 *99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.093 | 8 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.7E-38 | 9 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MSNGGAAGPC GACKFLRRKC VRGCIFAPYF DSDQGTAHFA AVHRVFGASN ASKLLLRIPP 60 HRRLDAVITL CYEALARVRD PVYGCVAHIF TLQQQVVNLQ AELAYIQARI STLQRSPLPP 120 PQHPCLSSPN IRTSSELAGN SSCLQTGIFD PSQSEETSPE MVSFCNAVDQ EVEDIGDLQS 180 LAREYVSRYF PGVRFRPPTS Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-37 | 5 | 103 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-37 | 5 | 103 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011090856.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090856.2 | 1e-148 | LOB domain-containing protein 19 | ||||
Swissprot | O81322 | 4e-68 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | A0A2G9I1Z7 | 1e-101 | A0A2G9I1Z7_9LAMI; Uncharacterized protein | ||||
STRING | EOX96194 | 6e-94 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 2e-70 | LOB domain-containing protein 31 |