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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011090844.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 226aa MW: 25595.5 Da PI: 8.6067 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.7 | 1.5e-11 | 72 | 117 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+RR+++ ++f+ L++l+P+++ + K+ K i +v+YIk+L+ XP_011090844.1 72 KERKRREQMSEKFSLLQSLVPTLV--KTFKPPKEKIIGDTVNYIKYLK 117 7*********************75..999*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.544 | 64 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.3E-11 | 70 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.31E-9 | 71 | 119 | No hit | No description |
SuperFamily | SSF47459 | 9.16E-13 | 71 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.9E-9 | 72 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.2E-12 | 72 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MSERGKGECG EQETEEEEIR RLLLGIMEGY NDNVIPSLSY FSPFPGISIA EKGSSSRKRE 60 KDEISWVQSL IKERKRREQM SEKFSLLQSL VPTLVKTFKP PKEKIIGDTV NYIKYLKQET 120 ARLEGLKKSR CKEPTVAKPG LFKCTDENTS VKVAVSNGAT FLAVQLPFRR GLVPEIVRVF 180 EKHRAEVLEA RICVNEQQLL TFTATIILAS DGDSSIDKIR DEILTL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 56 | 76 | RKREKDEISWVQSLIKERKRR |
2 | 72 | 77 | ERKRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011090844.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090844.1 | 1e-164 | transcription factor bHLH25-like | ||||
TrEMBL | A0A2G9GFP2 | 2e-77 | A0A2G9GFP2_9LAMI; Uncharacterized protein | ||||
STRING | Migut.G00203.1.p | 6e-78 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13248 | 14 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 4e-10 | bHLH family protein |