PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011090829.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

FAR1

Protein Properties

Length: 771aa MW: 88428.9 Da PI: 7.971

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011090829.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.5	1.4e-20	52	126	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+ YA++vGF++r+ + ++s+ +g++++r+fvCskeg++++ +rtgC a ++v+k ++gkw+++++++eHnHe+ XP_011090829.1 52 EFYSCYATQVGFKIRIGQLYRSRVDGSVISRRFVCSKEGFQTN--------------SRTGCPAFIRVQKVDSGKWVLANIKKEHNHEF 126 6*************************************987..............589*************************98 PP
2	FAR1	66.3	7.9e-21	203	278	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY +YA ++GF++r+ + +sk++g+it+r+fvCskeg++++ +r+gC a ++++++++g+w+v++l++eHnHe+ XP_011090829.1 203 KFYYTYAANIGFRIRIGQLFRSKHDGSITSRRFVCSKEGHQHP--------------SRVGCGAYMRIQRQESGRWVVDRLQKEHNHEFE 278 6************************************9998..............4899************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.1E-16	52	126	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.8E-16	203	277	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.1E-27	380	472	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.361	655	693	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.8E-8	664	690	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.1E-8	668	695	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 771 aa Download sequence Send to blast
MNREELGNIM TVRTKPAALL VAQSNGHRDD EGESKMEPQV GLEFDSAEEA QEFYSCYATQ 60 VGFKIRIGQL YRSRVDGSVI SRRFVCSKEG FQTNSRTGCP AFIRVQKVDS GKWVLANIKK 120 EHNHEFEASG EICPPRIQRK SFPTPRSSVG GASRTGIRSH EDDSPSDIVD IKRLKKEEMD 180 AAGGPVGEPY KGLEFNSAND AYKFYYTYAA NIGFRIRIGQ LFRSKHDGSI TSRRFVCSKE 240 GHQHPSRVGC GAYMRIQRQE SGRWVVDRLQ KEHNHEFETP TDPSRLVSVA SKGYNREEGS 300 SVLENLDLVE TNGGLSLVKR VRESNIGSDW YNVLLDYFQS RQAEDTGFFY AVEMREGKGM 360 NIFWADARSR FSCSQFGDAI VFDTTYRRGS YCLPFASFVG VNHHRQPVLL GCAVIAEESE 420 ESFTWIFQAW ARSMSGCRPV SIIADQDRPI QQSIAQVFPG THHRFSAWQI LAKEQENLGA 480 LLSMDTEFKF EYETCIFQSQ TASEFDSAWN MLMNKYNLRE NTWFKEMYRM RKSWVPLHIK 540 GTFFAGIPVD GSLKSYFGTL LSAQTPLNEF IVRYEKALEQ RREEERKEDF NSFNLQAVLH 600 TKDPIEEQCR RLYTITMFKV FQKELLECYS YVGIKINVEG AISRYLVQKC GNGDERNTVA 660 FNASTLNISC SCKMFEFEGV LCRHALKVFQ IMNIRELPSR YILHRWSKNA KYGILRDADS 720 GGGSQDFKAL MMWSLREEAR NYIEAGAASL ERYKLAFEIM QEGRRNLCWQ N

Sequence ? help Back to Top

Protein Sequence Length: 771 aa Download sequence Send to blast

MNREELGNIM TVRTKPAALL VAQSNGHRDD EGESKMEPQV GLEFDSAEEA QEFYSCYATQ  60
VGFKIRIGQL YRSRVDGSVI SRRFVCSKEG FQTNSRTGCP AFIRVQKVDS GKWVLANIKK  120
EHNHEFEASG EICPPRIQRK SFPTPRSSVG GASRTGIRSH EDDSPSDIVD IKRLKKEEMD  180
AAGGPVGEPY KGLEFNSAND AYKFYYTYAA NIGFRIRIGQ LFRSKHDGSI TSRRFVCSKE  240
GHQHPSRVGC GAYMRIQRQE SGRWVVDRLQ KEHNHEFETP TDPSRLVSVA SKGYNREEGS  300
SVLENLDLVE TNGGLSLVKR VRESNIGSDW YNVLLDYFQS RQAEDTGFFY AVEMREGKGM  360
NIFWADARSR FSCSQFGDAI VFDTTYRRGS YCLPFASFVG VNHHRQPVLL GCAVIAEESE  420
ESFTWIFQAW ARSMSGCRPV SIIADQDRPI QQSIAQVFPG THHRFSAWQI LAKEQENLGA  480
LLSMDTEFKF EYETCIFQSQ TASEFDSAWN MLMNKYNLRE NTWFKEMYRM RKSWVPLHIK  540
GTFFAGIPVD GSLKSYFGTL LSAQTPLNEF IVRYEKALEQ RREEERKEDF NSFNLQAVLH  600
TKDPIEEQCR RLYTITMFKV FQKELLECYS YVGIKINVEG AISRYLVQKC GNGDERNTVA  660
FNASTLNISC SCKMFEFEGV LCRHALKVFQ IMNIRELPSR YILHRWSKNA KYGILRDADS  720
GGGSQDFKAL MMWSLREEAR NYIEAGAASL ERYKLAFEIM QEGRRNLCWQ N

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011090829.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090829.1	0.0	protein FAR1-RELATED SEQUENCE 7-like isoform X1
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A2G9HD95	0.0	A0A2G9HD95_9LAMI; Uncharacterized protein
STRING	Migut.N00138.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7347	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]