PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011090684.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family CPP
Protein Properties Length: 789aa    MW: 85556.1 Da    PI: 5.4957
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011090684.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.63.9e-16493531240
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      +k+CnCkkskClk+YCeCfaag++C e C C dC+Nk 
  XP_011090684.1 493 ACKRCNCKKSKCLKLYCECFAAGVYCVEPCACIDCFNKP 531
                     589**********************************96 PP
2TCR51.12.7e-16578616139
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                     ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN 
  XP_011090684.1 578 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 616
                     589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.7E-18492533IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.245493618IPR005172CRC domain
PfamPF036387.0E-12495530IPR005172CRC domain
SMARTSM011147.5E-18578619IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.7E-12580616IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    Send to blast
MGEGFEISAK ESNQEEGEVM DTPERSKNNQ IAASISKFED SPVFNFLNSL SPIKPVKSIH  60
ITQTINPLSF ATLPSVFTSP HVSSLRESRF LRRHQLSDPS KPEFSSDERS TIDTNKVNIE  120
SSKQSDEERE NLNQRVSDGE VAGGPSYDCS KLVVESAEDP SYDFNSPNSG LRPSCGLKAK  180
HMADYACNSS TLVPFVQEAS QRGSYGSEVN IEGVSQVDQD KDVSSCDWEN LISDASNLLI  240
FESPNGTDSY KKSTDPGTSF YASIPNDMQN MHSLCAAGPG EQAGEGGEPE HLSTQPGEGS  300
EITEIADSHD IIAGSSKMDY EHLSGLYRGM RRRCLVFEMA GGRRKHMDEN SGSDSSAMLQ  360
SDGSTSSNDQ KLLPMRTGND SSRRVLPGIG LHLNALATTP KDYKIVNHDS SASGRLLIGP  420
STSVNFHPST TGQELLNNIL SVAPSDREID GIDNALLPVE DCQASGYMAN EEINQNSPKK  480
KRRRVEQSGE GEACKRCNCK KSKCLKLYCE CFAAGVYCVE PCACIDCFNK PIHEDTVLAT  540
RKQIESRNPL AFAPKVIRGP DSLSETGDDS SKTPASARHK RGCNCKKSGC LKKYCECYQG  600
GVGCSINCRC EGCKNAFGRK DGSGVISTEV EVEEDETDMP EKSMLDPSFQ NTAVENDLEQ  660
NIDSAPPATP LRAGRQSVQL PFSSKKKPPR SSFPSIGSSS GIYAGQGFGK PRFLPPPPKF  720
DKHFETVREE EMPDFLQGGS PVSGIKSLSP NGKRVSPPHG VVGTSPGLRS SRKLILQSIP  780
SFPSLTPNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1849761514120Protein lin-54 homolog
5fd3_B1e-1849761514120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1478483KKKRRR
2480484KRRRV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011090684.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090684.10.0LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 2
TrEMBLA0A2G9GVD90.0A0A2G9GVD9_9LAMI; Metallothionein-like protein
STRINGMigut.G00370.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24672345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-161TESMIN/TSO1-like CXC 2