PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011090418.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GATA
Protein Properties Length: 351aa    MW: 38081.2 Da    PI: 6.4224
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011090418.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.51e-19271305135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg+tkTp+WR gp g+ktLCnaCG++y++ +l
  XP_011090418.1 271 CSHCGVTKTPQWRAGPLGSKTLCNACGVRYKSGRL 305
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.9E-17265319IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.242265301IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.18E-15267328No hitNo description
Gene3DG3DSA:3.30.50.104.2E-15269303IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.03E-14270318No hitNo description
PROSITE patternPS003440271296IPR000679Zinc finger, GATA-type
PfamPF003201.8E-17271305IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MLYRTHHHPL LFTFNPFSHS SSALSSHLLP SPRLQEMEAV QGDSRGGLVP ETPAKTAVPL  60
DECLGGNGDD FFVDELLDFS NGYSETEEQP PPEESQEIEQ GKDKNCCVSQ EKETAPPEDS  120
SLSGKDDFGS LQESELSFQA EGLESLEWLS HFVEDSFSDY SLAGKLPPKP TENSSGTARE  180
QPCFTTPVQT KARTKRARSG VRVWPVLSPS FTETSTSSSS STSSTTSFPQ SSLGLVQTQT  240
GESSLGKTPP KKQKRKPADG GGGGAAQPRR CSHCGVTKTP QWRAGPLGSK TLCNACGVRY  300
KSGRLLPEYR PACSPTFSSE LHSNNHRKVL EMRRKKEAAE TTGLPPPVQS F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249256PKKQKRKP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011090418.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090418.10.0GATA transcription factor 5
SwissprotQ9FH576e-67GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A2G9HGJ91e-137A0A2G9HGJ9_9LAMI; GATA transcription factor
STRINGMigut.L00033.1.p1e-118(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.25e-67GATA transcription factor 5