PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011090189.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 515aa    MW: 56882.6 Da    PI: 7.2549
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011090189.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.000998198219
                    EETTTTEEESSHHHHHHH CS
         zf-C2H2  2 kCpdCgksFsrksnLkrH 19
                    +C++Cgk F ++ ++  H
  XP_011090189.1 81 TCENCGKEFVSWKSFLEH 98
                    6**************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003557.41335IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.5591335IPR007087Zinc finger, C2H2
PfamPF139120.00221335IPR007087Zinc finger, C2H2
SuperFamilySSF576678.39E-51335No hitNo description
PROSITE patternPS0002801535IPR007087Zinc finger, C2H2
SuperFamilySSF576678.39E-57599No hitNo description
SMARTSM0035523080100IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.19E-8221244No hitNo description
SMARTSM003550.13222244IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076222249IPR007087Zinc finger, C2H2
PfamPF139121.5E-9222246IPR007087Zinc finger, C2H2
PROSITE patternPS000280224244IPR007087Zinc finger, C2H2
SuperFamilySSF576676.19E-8301328No hitNo description
PfamPF139124.1E-13305329IPR007087Zinc finger, C2H2
SMARTSM003550.46306328IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349306328IPR007087Zinc finger, C2H2
PROSITE patternPS000280308328IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MACIEDQQPN FKHYCRVCKK GFMCGRALGG HMRAHGIGDE NGNLEDDDPA SDWEDKLGER  60
TSNKRMYQLR TNPNRLKSCR TCENCGKEFV SWKSFLEHGK CSSDDASESL VSSPDQSDGE  120
DDGGGRRGGG WSKRKRSLRS KVGCLSSHYP PSEEDDLLLA RCLVQLANTR VDPPVAVEPE  180
ESCASASREE ERRHPTTFLG QTTNRAAFDQ KAKGVSSPRG LFECKACKKV FNSHQALGGH  240
RASHKKVKGC YAAKQDQVDE NSNLAAEDDV ITNNEEFLPS KSASSLQFEQ GPAALVGAAR  300
RKSKVHECSI CHRVFTSGQA LGGHKRCHWI TSNAPDTSSS LPKFHLQDTN NMEPATNNHQ  360
QQQQQQQHKP NTDASDKLDL NVPAWAHMSG VRRDPRNPLS FEVSTDMHLQ PWIGRDNRDN  420
NSGPHCHSQQ FQLKNENENN NINKSSGKKN NSNNVVSTKK ASDSNNYVED EADSKLKLAK  480
LSDLNDLKEM DTSGTASSQW LQVGIGSTTE TAGDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123129GGRRGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011090189.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090189.10.0uncharacterized protein LOC105170939
TrEMBLA0A2G9HTX70.0A0A2G9HTX7_9LAMI; Uncharacterized protein
STRINGEOX963310.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.12e-23C2H2-like zinc finger protein