PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011090154.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | GRAS | ||||||||
Protein Properties | Length: 471aa MW: 53173.2 Da PI: 6.0704 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 471.6 | 4.3e-144 | 46 | 468 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA++v+sg+le+a+ +L ++s+lasp+gd+mqR+a+yf eALa r++r ++++yka+++++ + ++ee+ a k+f+e +P++k+++ XP_011090154.1 46 LIHLLVNCANHVASGSLENANIALDQISHLASPQGDTMQRIASYFSEALADRVLRAWPGVYKAFHSTRIP--VVAEEILAKKMFFEFCPFMKVAF 138 689*************************************************************999998..6********************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 ++ NqaI+e++ege++vH+iD+++++++QW aL++ L++Rpegpp+lRiTgv++ +ke le++++ L++ Ae+l++pf+fn+ v+++le+l+ XP_011090154.1 139 VISNQAIVESMEGEKMVHVIDLNATEPAQWCALIRDLSARPEGPPHLRITGVHQ----RKEVLEQMAHILTEEAENLDLPFQFNP-VVSKLENLD 228 ******************************************************....9**************************.799****** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrll.........................................................desvsleserdevL 228 +e+Lrvk+gEala+++++qlh+ll +s +++ ++d++L XP_011090154.1 229 IEKLRVKTGEALAISSIMQLHTLLaseddlrkkspstpmnngigvnlqrvahmnqstlrellekdtvngyspstdsassspMSSIHSP-NIDSFL 322 ****************************************************************************775443333333.59**** PP GRAS 229 klvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323 +++++lsPkv+vv+eq++dhn+++++er++e+l++y+alfd+le+ lpr s er k+E+++lg+ei+n++aceg errerhe+lekW +rle aG XP_011090154.1 323 NALWGLSPKVMVVTEQDSDHNAKNLMERLSESLYFYAALFDCLESALPRGSLERLKMEKMILGEEIKNIIACEGVERRERHEKLEKWIQRLELAG 417 *********************************************************************************************** PP GRAS 324 FkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 F +vpls++a+ qak+ll+ ++ dgyr++ee+g++v++W+drpL++vSaW+ XP_011090154.1 418 FANVPLSYYAMLQAKRLLQSYNCDGYRIKEENGCVVICWQDRPLYAVSAWK 468 **************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.494 | 20 | 448 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-141 | 46 | 468 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MFQEDGSSSV TSSPLPMFPM MTLSPGTMSP YPWLKELKPE ERGLYLIHLL VNCANHVASG 60 SLENANIALD QISHLASPQG DTMQRIASYF SEALADRVLR AWPGVYKAFH STRIPVVAEE 120 ILAKKMFFEF CPFMKVAFVI SNQAIVESME GEKMVHVIDL NATEPAQWCA LIRDLSARPE 180 GPPHLRITGV HQRKEVLEQM AHILTEEAEN LDLPFQFNPV VSKLENLDIE KLRVKTGEAL 240 AISSIMQLHT LLASEDDLRK KSPSTPMNNG IGVNLQRVAH MNQSTLRELL EKDTVNGYSP 300 STDSASSSPM SSIHSPNIDS FLNALWGLSP KVMVVTEQDS DHNAKNLMER LSESLYFYAA 360 LFDCLESALP RGSLERLKME KMILGEEIKN IIACEGVERR ERHEKLEKWI QRLELAGFAN 420 VPLSYYAMLQ AKRLLQSYNC DGYRIKEENG CVVICWQDRP LYAVSAWKFR R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 6e-41 | 29 | 470 | 1 | 380 | Protein SCARECROW |
5b3h_D | 6e-41 | 29 | 470 | 1 | 380 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011090154.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090154.1 | 0.0 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A2G9HIR5 | 0.0 | A0A2G9HIR5_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N02362.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2914 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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