PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011090069.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 446aa    MW: 50026.9 Da    PI: 6.8773
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011090069.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.8e-12396443347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +W+t E++ l  +v+++G+g+Wk I  t     +gRt+ ++k++w+++
   XP_011090069.1 396 KWSTLEEDTLRAGVQKYGKGNWKVILTTQRdifEGRTEVDLKDKWRNL 443
                      8*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-12389445IPR009057Homeodomain-like
PROSITE profilePS5129412.683389446IPR017930Myb domain
SuperFamilySSF466894.68E-14391445IPR009057Homeodomain-like
SMARTSM007174.2E-7393446IPR001005SANT/Myb domain
CDDcd116602.05E-17395445No hitNo description
PfamPF002495.7E-9396443IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MDVDPDIAIW VLEFLLRQPL EDRMVNSLLR ALPLPTENSK LQKLILLKKL ESEMSRNSIS  60
ESTLELLEQL EEIEFRQGSE MVSDAMKHAY CSVAVECTVK LLLKGFGGVE LGEWRWKDEI  120
EAAVWEDNAC QSILKKSEGV NAIEAVNAYL REEKEKMGPS FLELVAEQVK NDDVLQGMLG  180
VGSVDQIAGN EAHLCSVGRD TDVGNVNNYM QKGKIKLRDK LVGLRGSRGL ASRKARRAKI  240
VESDEMKIGA SNKNYNLPHS PEVNGVRKAL QSSSLELQAV VKDPLPDALR LAEAISGVAR  300
EDKGHDPTEV NHVAGNQFVV DGAGVIHSTV PNVSDTRKRS LMERNSSAHT YEWDGSQEDR  360
TDCRGRLQLP SPRVINVSPL DRYEAANIKK RRKARKWSTL EEDTLRAGVQ KYGKGNWKVI  420
LTTQRDIFEG RTEVDLKDKW RNLTRC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1388392KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011090069.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090069.10.0telomere repeat-binding protein 2-like
TrEMBLA0A2Z7C2Q71e-166A0A2Z7C2Q7_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37742439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.12e-12TRF-like 5